Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9 230 2e-55 seq62 187 3e-42 seq231 122 9e-23 >seq9 Length=695587 Score = 230 bits (254), Expect = 2e-55 Identities = 616/929 (66%), Gaps = 39/929 (4%) Strand=Plus/Minus Query 21110 TTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt 21169 |||||| |||| ||||||||||||| |||| ||| |||||| ||||||| || || Sbjct 333272 TTTATACAAAT---TATTTAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTG 333216 Query 21170 GACATAATTCCCATTTT--TTG--ATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTT 21225 ||||| || |||| ||| ||| || | |||| | || || ||||| |||||||| Sbjct 333215 GACATTAT----ATTTGCCTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTT 333160 Query 21226 TCCTTCCAATGATATAGAT-TCCATAAAATCAAATGGATTT--TCAGATTTAAATATTTT 21282 ||| | ||||| ||| | ||| |||| ||||||||| | || | ||||| |||| Sbjct 333159 TCCACTGACAGATAT-GATATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTT 333101 Query 21283 ATTACAACCCAGTTCTGAT-AATAATCTATCTGCTACAAATTCTATATATTGACACATTA 21341 || ||| | | || |||||||| || || | ||| |||||||| ||||| Sbjct 333100 CATAT---CCAATAGAAACCAACAATCTATCAGCAACCATTTCAATATATTGTTGCATTA 333044 Query 21342 ATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTA 21401 || || |||||| || ||||| | || || | | || | | ||| || || | Sbjct 333043 ATCTACTATTCATTCCAATCAAATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAA 332984 Query 21402 TAGAGACGGCTTCA---ACAATTATATTTATTA-TCCTAGATGTACT--AGGGGGATACA 21455 | || |||||| |||| | || | || | | || ||| | || | | || Sbjct 332983 TCTCAACAGCTTCATAAACAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTATTTCA 332924 Query 21456 ATAATTGTTTAA-ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATT 21514 || || || | | |||||||| ||||| ||| || |||||||| | | ||| Sbjct 332923 AT----GTGGAATAGAGTAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATC 332868 Query 21515 AATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGAC 21574 ||||||||||| |||| |||||| ||||| | || | || |||||||| || ||||| Sbjct 332867 AATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAA 332808 Query 21575 GCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG 21634 ||| ||| || |||||||| ||||| || |||||||| | |||| |||| | Sbjct 332807 CAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCA 332748 Query 21635 TATGTAGATTCTTTATCCAAT--ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 | | ||||| ||| |||||||| |||||| || || || | || || Sbjct 332747 AAC--AAATTCTCAG---AATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTG 332693 Query 21693 AATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNN 21752 | | ||||||||| || | || ||| ||||| |||| | || | || Sbjct 332692 ATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAG 332633 Query 21753 NNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGT 21812 |||||||||||||| ||| |||||||| || || || |||||||| | Sbjct 332632 TTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCAT 332573 Query 21813 AAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCAT 21872 | ||||||||||| |||| |||||| | | ||| ||||| | ||||||| Sbjct 332572 AGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCAT 332513 Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGT 21932 | || |||||||||||||| ||||| || |||| | | || || |||| | |||| | Sbjct 332512 TGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCAT 332453 Query 21933 TATCTGTTAATTTTTTCCAATCTAATAAATC-TTTTGATAAATCTACTTCTTCAGTTGTC 21991 || | | ||||| ||| || || ||| | ||| | ||| || || || |||| Sbjct 332452 TAGAATTGAGTTTTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTC 332394 Query 21992 CAAAAGCTAGCAATAGCCTTTTTATACAT 22020 || || ||| || | |||||| ||||| Sbjct 332393 CAGAATGAAGCCATTGTCTTTTTGTACAT 332365 >seq62 Length=286411 Score = 187 bits (206), Expect = 3e-42 Identities = 598/915 (65%), Gaps = 34/915 (4%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || ||||||| ||| |||| ||| |||||| ||||| | ||| ||||| || | Sbjct 259590 TTGTTTAAAAGTCATCATCCAATCTGAAAACCTTATCCTTCTTTGAGGACATGAT----A 259645 Query 21183 TTTT--TTG--ATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGAT 21238 ||| ||| ||| |||| |||| | ||||| || || |||||||| || | || Sbjct 259646 TTTGCCTTGGCATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCACTAACAGAA 259705 Query 21239 ATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCT 21298 ||| | ||| |||| ||||||||| ||| || | || |||| | |||| || | Sbjct 259706 ATAATGTTCATCCAATCGAATGGATTTGGAGAATTGTAAATCTTATCATAACCAAGGGAT 259765 Query 21299 GATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCG 21358 || | |||||| || || | ||| || ||||| |||||| | | |||||||| Sbjct 259766 ACCAAAAGTCTATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCA 259825 Query 21359 ATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT----TTCTATAGAGACGGCTTC 21414 ||||| | ||| || | | |||| || ||| || || ||| || || ||||| Sbjct 259826 ATCAAATCTACTGGCAAA-CTTT---CACAAATGAATTCCTTTTCAATTTCAACAGCTTC 259881 Query 21415 AACAATTATATTTATTATC--CTAGATGTACTAGGGGGATACAATA-ATTGTTTAA-ACA 21470 | || || | | | | || | || | | || | | | ||| || | | Sbjct 259882 AGAAACTAG-TGAGTGAACAACTTGTTGCGGCAATTTGGTAAACTTCAATGTGGAATATA 259940 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 ||||| ||||||||| || || |||||||| | ||||||||||| || |||| Sbjct 259941 ATAAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATG 260000 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAA 21590 ||||| ||||| | || | || || |||||||| || || || | || || | Sbjct 260001 CCAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGA 260060 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT--TT 21648 ||||||| || ||||| |||||| || | ||| ||||| | || | ||||| || Sbjct 260061 AGAAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAAT--AAATTCTCATT 260118 Query 21649 ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA-ATC-AATTGTATCA 21706 || | ||||||| ||||| |||||| |||| |||| || || |||||| Sbjct 260119 ATTGA---TCCATTTCATAGCCCAACGTGCCTT--CTTTTGTACAGATGGAACAGTATCA 260173 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 || || || || | | ||| | |||| | ||| |||| | Sbjct 260174 ATGGCATTGAACAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTA 260233 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||||| ||| |||||||| || || || || || ||||| |||||||| || Sbjct 260234 CTATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCT 260293 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 |||| ||| ||||| | |||| |||| ||| |||||||| || || || || Sbjct 260294 TCTGGTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCG 260353 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||| || || || | | | || ||||| | | ||||||| ||| || | Sbjct 260354 GACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTG 260413 Query 21947 TTCCAATCTAATAAATC-TTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 |||| | | | ||| | ||| | ||| |||||||||| ||||| ||| || || Sbjct 260414 GTCCATTGTGTAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCAT 260472 Query 22006 AGCCTTTTTATACAT 22020 ||||| |||||||| Sbjct 260473 GGCCTTCTTATACAT 260487 >seq231 Length=8293 Score = 122 bits (134), Expect = 9e-23 Identities = 182/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||||||||||| ||| |||||||| || || || |||||||| || ||||||||||| Sbjct 1190 ACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGC 1131 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| |||||| | | ||| ||||| | |||||||| || |||||||| Sbjct 1130 TTCTGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATC 1071 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 |||||| ||||| || |||| | | || || |||| | |||| ||| | | ||| Sbjct 1070 ACTGGCCGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAGTTGAGTTT 1011 Query 21946 TTTCCAATCTAATAAATC-TTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 || ||| || || ||| | ||| | ||| || || || |||||| || ||| | Sbjct 1010 TTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCA 952 Query 22005 TAGCCTTTTTATACAT 22020 | | |||||| ||||| Sbjct 951 TTGTCTTTTTGTACAT 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895587372160