Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq38 242 5e-59 seq9 203 4e-47 seq62 199 5e-46 seq231 183 4e-41 seq79 82.4 1e-10 >seq38 Length=381539 Score = 242 bits (268), Expect = 5e-59 Identities = 778/1192 (65%), Gaps = 20/1192 (2%) Strand=Plus/Minus Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG- 62628 |||| |||| || || |||| |||||| || ||| ||||| || || | ||| Sbjct 296241 TCCTTCATAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGG 296183 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 || | | ||||||||||| ||||| | | | || || | || ||||| || || | Sbjct 296182 CAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGA 296123 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 ||||| | | || || || || || || ||||||||||| | ||| || |||| Sbjct 296122 ATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTC 296063 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 | ||||| ||| | | |||||| | || |||||||| |||| ||||| | Sbjct 296062 TGTGTCTAAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCT 296003 Query 62809 TATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-- 62863 |||| | ||| || |||| ||||| || || | | || | |||| | Sbjct 296002 TATTCAAATTGTAAGTGGCAATC---TTGACAACTTCGTATAACTTTTGGTGATCATAGG 295946 Query 62864 -TCGCCCATCT--ATT-ACAAACATGTTCAAG-GCAACAGATGCCAGATTACAAACGGCT 62918 | | ||| ||| ||| || | | ||| |||| | || || ||||| || || Sbjct 295945 TTTGAGTTTCTTCATTGACATACTT-TGGAAGAGCAATACTGGCAAGGTTACATACAGCA 295887 Query 62919 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 62978 || |||| || | | | | ||| || || ||||| || | ||| | ||||||| || Sbjct 295886 ACTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTA 295827 Query 62979 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63038 || | ||||||||||| ||| | ||||| | |||||| || | ||| |||| | Sbjct 295826 CCAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACA 295767 Query 63039 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT 63098 ||||||||||| || | ||| ||||| || ||||| || ||||||| || | Sbjct 295766 CCAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTC 295707 Query 63099 TTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 ||| | | ||||||||| ||| ||||| ||| | | ||| || || ||||||||| Sbjct 295706 TTGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACA 295647 Query 63159 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63218 | | | || || ||||| ||||| | | ||||| || | |||||||| || Sbjct 295646 TCAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACA 295587 Query 63219 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 63278 |||| ||| |||||||| | ||| | | | | |||| |||||| | ||| ||| Sbjct 295586 CGTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCT 295527 Query 63279 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338 || || || ||||||| | | ||| | || | | ||| ||||| ||||| |||||| Sbjct 295526 TCCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCC 295467 Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398 || || ||||| | | || | || || || ||||| | ||||| || ||| Sbjct 295466 AAATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTG 295407 Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458 | ||| ||||||||||||||||||| | ||| |||||| | || || ||||| || Sbjct 295406 TCATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATG 295347 Query 63459 TAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 || |||| || | |||||| || ||| | ||| || || || || || || Sbjct 295346 TATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAA 295287 Query 63519 ATTAATGCGCATCGTTTTAA-CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTT 63577 || | || || || |||| || ||||| ||||| | ||| |||||| |||| Sbjct 295286 ATAAGGGCACA-AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGA 295228 Query 63578 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63637 || || ||||| | |||||| || ||| || ||||| || || || ||||| Sbjct 295227 AACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGA 295168 Query 63638 AGCGTGCGTAAACCATTTTTC-AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63696 || || |||| ||| | | |||| || || || | ||| ||| || || | Sbjct 295167 GGCATGAATAAA-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGT 295109 Query 63697 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | | | || || |||| |||||||| |||||||| || |||||||| Sbjct 295108 CACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 203 bits (224), Expect = 4e-47 Identities = 584/884 (66%), Gaps = 27/884 (3%) Strand=Plus/Minus Query 33030 ACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT----TCCATGAAATCAA 33085 || || ||| ||||| ||||| || ||||| ||| | || | | ||| |||| | Sbjct 333185 ACTTTCTTCTCAAAAA--AGTTTGTCTTTCCACTGACAGATATGATATTCATCCAATCGA 333128 Query 33086 ACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA---TCTATCCG 33142 | ||||| | |||||||| |||| | |||| ||| ||||| ||| |||||| | Sbjct 333127 ATGGATTTGATGAGTTATAAATCTTTTCATATCC-AAT--AGAAACCAACAATCTATCAG 333071 Query 33143 CGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAA 33202 | || | ||| |||||| || ||| | | || ||||||||| || | | |||||| | Sbjct 333070 CAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAAATCAACTGGTA 333011 Query 33203 GAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGG 33262 | || | | |||||| | ||||| || || || | || || ||| Sbjct 333010 AACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAGTGAATGAACTA 332951 Query 33263 TTTCTTCAC-----TCGGTGGATGCAATAAATGTTTAA-ACATCAAACATGCGAAATCGC 33316 || || | | ||| || | ||||| || | | |||||||||||||| Sbjct 332950 CTTGTTGAGGTAATTTAGTGTATT---TCAATGTGGAATAGAGTAAACATGCGAAATCTG 332894 Query 33317 AGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 33376 || | || || || | | || | ||| || || || | | || ||||| || | Sbjct 332893 TATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGAC 332834 Query 33377 CACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTG 33436 |||| || || | ||| || || ||| || |||||| ||||| ||||| || || Sbjct 332833 CACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACAC 332774 Query 33437 CAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCTGTCATGTATCCACTTTTGAGCC 33495 ||||| || | | ||| || || | | | | | || ||||| || ||| Sbjct 332773 ATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGA-ATTAATCCATTTCAATGCC 332715 Query 33496 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 33555 || | || ||||||| || | || | || || ||||||| ||| ||| ||| || Sbjct 332714 CAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTT 332655 Query 33556 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 || | ||||||| ||| || || | | |||||||||||| | |||||| ||| Sbjct 332654 TCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTT 332595 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCTGTACA 33674 |||||||| || |||||||| ||||||||||| || || |||| | || |||| || Sbjct 332594 TCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTGCCAT 332536 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 ||| ||| | ||||||||| || ||||| |||||||||||||| || |||| || Sbjct 332535 GAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCAC 332476 Query 33735 ATGTTTT-ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 33793 ||| || || |||| || ||| | | | ||||| | ||| ||| | ||||| | Sbjct 332475 -TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTTATATCAGTGT 332417 Query 33794 ATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGA 33853 | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | ||| | Sbjct 332416 GAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACA 332357 Query 33854 TGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | | | ||| || | ||| || | |||||| | || |||||| Sbjct 332356 TTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 332313 >seq62 Length=286411 Score = 199 bits (220), Expect = 5e-46 Identities = 388/563 (69%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 |||| ||| ||||| || | | || ||||| || ||||| || || | |||||| ||| Sbjct 259982 ATTAATTCATTGGAGAATGCCAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATG 260041 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC-AATAAGTCTCTC 33458 ||| ||| || ||||| ||||| || ||||| || ||||||||| ||||| | || Sbjct 260042 GAACAGAAAGAACCAGAGAAGAAAATACCTTCAACACAAGCAAAGGCCAATAAACGT-TC 260100 Query 33459 TCCATA-ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACAC 33517 || | | | | | || ||||| || ||||||| |||||||||| |||| Sbjct 260101 GGCAAATAAATTCTCATTATTG-ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAG 260159 Query 33518 AAGGCATCGTTTCTATGGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACAT 33574 | || | || || |||||||| || | ||| || ||| || || | ||||| || Sbjct 260160 ATGGAACAGTATCAATGGCATTGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCA- 260216 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 |||| || || | |||||||||||| | ||| || |||||||| || || || || | Sbjct 260217 AAGTTTCAATGAGTGTACTATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAAC 260276 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTT 33694 ||||||||||||| || || | || ||||| || | |||| ||| |||||||| Sbjct 260277 CGTAGAAACATCTCGCTTCTGGTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTT 260336 Query 33695 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 33754 |||| || || ||||| || ||||| || || || ||| || ||||| | || || Sbjct 260337 CATTGACAATACCGTCGGACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTT 260396 Query 33755 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814 ||| |||||| | | |||| | | ||||| | | ||| |||||||| | | Sbjct 260397 CGTTTGGTGTCAAGGTGGTCCATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAG 260456 Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874 |||| || |||||| ||||| |||||||| | ||| || | ||||| || |||| Sbjct 260457 TCCAGAAGGATGCCATGGCCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGA 260516 Query 33875 AAATAACAAATCTATTTGGATTT 33897 | | ||||| | | ||||||| Sbjct 260517 ATAAGACAAAACGGTGTGGATTT 260539 >seq231 Length=8293 Score = 183 bits (202), Expect = 4e-41 Identities = 290/408 (71%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| | || ||||||| || | || | || || ||||||| ||| ||| ||| Sbjct 1288 GCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTT 1229 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 |||| | ||||||| ||| || || | | |||||||||||| | |||||| Sbjct 1228 CTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATA 1169 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTCTGT 33671 ||||||||||| || |||||||| ||||||||||| || || |||| | || |||| || Sbjct 1168 TTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTGC 1110 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 ||| ||| | ||||||||| || ||||| |||||||| ||||| || |||| Sbjct 1109 CATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAG 1050 Query 33732 TACATGTTTT-ATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCT 33789 || ||| || || |||| || ||| | | | ||| ||||| | ||| ||| | ||||| Sbjct 1049 CAC-TGTCTTGATGAAATGTTGTTCAT-TAGAGTTGAGTTTTTCCCATTCAGTTATATCA 992 Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 | | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | | Sbjct 991 GTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCC 932 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || || | | ||| || | ||| || | |||||| | || |||||| Sbjct 931 CACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTT 884 >seq79 Length=326815 Score = 82.4 bits (90), Expect = 1e-10 Identities = 200/299 (67%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 80955 GTGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 81014 || || ||||| |||||||| || ||||| || || | |||||||||||||| | Sbjct 192788 GTTATTGGTATTGATGAAGGTCAATTCTTCCCTGATTTGGTTGAATTCTGTGAAGCTGCT 192847 Query 81015 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 81074 || || | ||| ||||| || || || || | ||||| || || ||| | |||| Sbjct 192848 GCTAATGGAGGTAAAATTGTAATTGTTAGTGCTTTGGATGGTACTTTCCAAAGAAAACAA 192907 Query 81075 TTTAATAATATT-TTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGT 81133 ||| ||| || || || | ||||| | |||||| || || ||||| | ||||| Sbjct 192908 TTTGGAAATGTTCTTTCAT-TGGTTCCAATGGCTGAAAGTGTTGTGAAACTTAAGGCTGT 192966 Query 81134 GTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACGATTGGGTGAGGAAACCGAGAT 81193 |||||| || ||| || ||| |||| |||||||| | ||| ||| | | Sbjct 192967 TTGTATGGTTTGTGGTAAAGATGCTGCCTTCTCTAAACGTATCACTGATGAACAACAAAC 193026 Query 81194 AGAAATAATAGGAGGTAATGATATGTATCAATCGGTGTGTAGAAAGTGTTACATCGACT 81252 ||| | || || || ||||| |||| | |||||||||||||| || |||| Sbjct 193027 TGAAGTTATTGGTGGATCTGATAAGTATATTGCCACTTGTAGAAAGTGTTATAT-GACT 193084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941095117440