Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq38 277 5e-69 seq62 199 1e-45 seq102 138 3e-27 >seq38 Length=381539 Score = 277 bits (306), Expect = 5e-69 Identities = 855/1309 (65%), Gaps = 34/1309 (3%) Strand=Plus/Plus Query 363292 TCACCACTCATTGCCGATGACATTATTGAATGTATCCGTT-CTAATGCGGAAGTTTTCGA 363350 |||||| | ||| |||| || || || ||||| | | | |||| ||| ||||| || Sbjct 294898 TCACCATTAATTTCCGAAGAAGTTTTT-AATGTTGTTGCTGCCAATGTGGATGTTTTGGA 294956 Query 363351 TGACGTTATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGA 363410 | | | ||||| ||| | ||| || | | ||| || ||||| ||||| | || Sbjct 294957 TCAAGCCATCAAGAGTGAAAGAGATTTCCAATTCGATTACTTTGGATACAAGACTCTCGA 295016 Query 363411 GAAATCCTACCTA-TCT--CGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTT 363467 | | |||| | || | | | || || ||||| ||| | || || || ||||| Sbjct 295017 AAGAAGCTACTTGCTCAAACTTGCCGATAGTCGTATTGCCGAAAGACCACAACACATGTT 295076 Query 363468 AATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAA 363527 |||||||| | | |||||||| | || |||| || ||| |||| ||| | Sbjct 295077 TATGCGTGTAAGTTTAGGTATCCACGGAGGTGACATTGAAAGAGCCATTCAAACCTATGA 295136 Query 363528 GCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCG 363587 | || ||| | || | || | || ||| | |||||| ||| ||||||||| |||| Sbjct 295137 TTTACTCAGTAGTGGTATGTTTATTCATGCCTCTCCAACATTGTTCAATGCTGGTACTCC 295196 Query 363588 TAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTAT 363647 | |||||| ||| |||||| || || | |||||||| |||||||| | ||||| Sbjct 295197 AATTCCACAAATGAGTTCTTGTTTCCTCGTTTCTATGAAGGATGATTCCATTCATGGTAT 295256 Query 363648 CTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATC 363707 | ||| || ||||||| |||||| |||||||||||| ||| || || |||||| | || Sbjct 295257 TTATGATACCCTTAAGACTTGTGCCCTTATTTCCAAGTCTGCTGGTGGTATTGGTTTGTC 295316 Query 363708 GATCCACAATGTTCGTGC--ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAAT 363765 | |||||| || | || || || |||||| | || ||| ||| || ||| Sbjct 295317 AGTTCACAATATTAGAGCTTCTGGATCA--TACATTAGAGGTACAAACGGAACATCAAAT 295374 Query 363766 GGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825 || | |||| ||| | | || || | | ||||| || || ||||| || ||||| Sbjct 295375 GGTTTAATTCCAATGTTGAGAGTTTTCAATGACACTGCCAGATATGTCGATCAAGGTGGT 295434 Query 363826 GGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAG 363885 || ||| | || || || ||||| || ||| | || ||| || | || |||||||| Sbjct 295435 GGTAAGAGAAAGGGTGCCTTTGCCATTTATTTGGAACCTTGGCACTCTGACATTTTTGAC 295494 Query 363886 TTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTA 363944 ||| | || | | || || ||| || || || ||| | | || | ||| | |||| Sbjct 295495 TTTTTGGATTTGAGAAAGAATCAC-GGTAAGGAAGAAATCAGAGCTAGAGATTTATTCTT 295553 Query 363945 TGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACT 364004 | | ||||| || | || ||| | || || ||| | | | |||||||| Sbjct 295554 GGGTTTATGGGTCAACGATCTCTTCATGCAACGTGTTAAGGATGATGCCGAATGGTCACT 295613 Query 364005 CTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCT 364062 ||| || ||| | ||| || ||||||| | ||||| |||||||| || | | | Sbjct 295614 CTTCTGTCCAAATGAAGCTCAAGGTCTTGCTGATGTTTGGGGTGAAGAATTCAATCAATT 295673 Query 364063 CTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTA 364122 ||||| ||| |||||| || |||||||| | || || || || | || Sbjct 295674 ATATACCAAA--TATGAAAGAGAAGGAAAGGCCAAGAGAACCATCAAGGCTCAAGAACTC 295731 Query 364123 TGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGAT 364182 |||||||| || || || | || ||||| || || || || ||||||||||| ||| Sbjct 295732 TGGTTTGCTATTATTGAAGCCCAAATTGAAACTGGTGTCCCATACATGTTGTACAAGGAT 295791 Query 364183 TCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGT 364242 || || || | || ||||| || || |||||||||| || || ||| | ||| Sbjct 295792 TCTTGTAATAGAAAATCCAATCAACAAAACCTTGGTACCATCAAGTCTTCTAACTTGTGT 295851 Query 364243 ACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATC 364302 || || |||||||||| || ||||| || || ||| |||||||||||||| || Sbjct 295852 ACTGAAATTATTGAATTTACTGCTCCTGATGAAGTTGCTGTATGTAACCTTGCCAGTATT 295911 Query 364303 GCGCTTCCGGCGTTTGTAAAAGATGGTACT------TTTGACCACCAGCATCTTTATGAC 364356 || ||||| || ||| || || | ||| | ||| ||||| | | || || Sbjct 295912 GCTCTTCCAAAGTATGTCAATGAAGAAACTCAAACCTATGATCACCAAAAGTTATACGAA 295971 Query 364357 GTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATT 364416 || | | ||| |||| |||| | | ||| |||| || ||||||||||| ||| | Sbjct 295972 GTTGTCAAGATTGCCACTTACAATTTGAATAAGATTATTGATAAGAATTATTACCCAGTC 296031 Query 364417 CCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTC 364476 |||||| || ||| | | || | || |||||||| ||||| || || | Sbjct 296032 GAAGAAGCCAAGAAGAGTAACTTTAGACACAGACCAATTGGTCTCGGTGTTCAAGGTTTG 296091 Query 364477 GCTGACGTTTTTATGATGCTCAAGATG-GCATTTGATTCG-----CCTGACGCTCGTGTT 364530 || || | ||| | |||||||| | || ||||| || ||| Sbjct 296092 GCCGATGCTTTCA------TCAAGATGCGTCTTCCATTCGAAAGTGAAGAAGCTAAAAAC 296145 Query 364531 CTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA-CTGCT 364578 || || | ||| ||||||||||| || || ||||| || |||| ||||| Sbjct 296146 CTCAACAGGGAAATCTTTGAAACCATTTACTTTGCTGCCATGACCTGCT 296194 >seq62 Length=286411 Score = 199 bits (220), Expect = 1e-45 Identities = 530/798 (66%), Gaps = 14/798 (2%) Strand=Plus/Minus Query 22141 GAAATTGATATTTCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGAACAACAT 22200 ||| ||||| || |||||||| || | ||| | | | ||| |||||||||||| Sbjct 260448 GAAGTTGATCTTCACACTGATATTACACAATGGACCACCTTGACACCAAACGAACAACAC 260389 Query 22201 TTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTA 22260 |||||||| | || |||| ||||||||| | | |||||||| || ||| ||| | Sbjct 260388 TTTATCAAGAGTGTTTTAGCTTTCTTTGCTGCGTCCGACGGTATTGTCAATGAAAAT-TT 260330 Query 22261 GTGACTA-ATTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCA 22319 ||| | | | ||| |||| | ||| ||||| || ||||||||||| ||| | || Sbjct 260329 GTGCCAACAATTTATGGCTGAGGTACAAATACCAGAAGCGAGATGTTTCTACGGTTTCCA 260270 Query 22320 AATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGA 22379 ||| ||||||||| | || || |||| ||| || | | | | | || | Sbjct 260269 AATTGCTATTGAAAATATCCATGCTGAAATGTATAGTACACTCATTGAAACTTTGATAAA 260210 Query 22380 AGAT-AAAGACGAACAACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGA 22438 ||| ||||| ||| || || ||| || ||| || ||| ||| | | | Sbjct 260209 GGATCAAAGA-GAAAGACATCGTTTGTTCAATGCCATTGATACTGTTCCATCTGTACAAA 260151 Query 22439 ATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTA 22498 | |||||| |||||| |||||||||| || ||||| || ||| || |||||| ||| Sbjct 260150 AGAAGGCACGTTGGGCTATGAAATGGATCAATAATGAGAATTTATTTGCCGAACGT-TTA 260092 Query 22499 TT-GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 || || |||||| |||||||| |||||||| ||||| | || ||| | || |||||| Sbjct 260091 TTGGCCTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTTTCTGTTCCATTTTTTGG 260032 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 | || ||||||| | ||||| ||| | | || || ||||| ||||| ||| ||| Sbjct 260031 TTGAAGAAACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATGAATTAATCTCCCGTGAT 259972 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT--ATCATTCATAAAC 22675 || || | || || |||||||| ||| | ||||| | ||| | || ||| Sbjct 259971 GAAGGATTACACACTGATTTTGCCTGTTTATTATATTCCA--CATTGAAGTTTACCAAAT 259914 Query 22676 TTCCATATGAAACTGT--ACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 | || | || ||| ||| || || | | || |||||| ||||| ||| Sbjct 259913 TGCCGCAACAAGTTGTTCACTCACTA--GTTTCTGAAGCTGTTGAAATTGAAAAGGAATT 259856 Query 22734 TATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATA 22793 ||||| || || |||||| | | |||||||| || | | |||| ||| Sbjct 259855 CATTTGTGAAAGTTTGCCAGTAGATTTGATTGGTATGAACTCTCGTTTAATGCAACAATA 259796 Query 22794 TATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGT 22853 ||| || | ||||| ||| | || || | || || ||||||| ||| ||| || Sbjct 259795 CATTGAAATGGTTGCTGATAGACTTTTGGTATCCCTTGGTTATGATAAGATTTACAATTC 259736 Query 22854 CGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGA 22913 |||||||| || |||||| | ||||||| || || ||||| || ||||| || Sbjct 259735 TCCAAATCCATTCGATTGGATGAACATTATTTCTGTTAGTGGTAAGACAAACTTCTTTGA 259676 Query 22914 AAAAAGAGTTGGTGAATA 22931 ||| | |||||||||||| Sbjct 259675 AAAGAAAGTTGGTGAATA 259658 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 145538 TTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCG---TCTGG 145594 ||| ||||||||||| ||||| ||||| |||| | |||| | || ||| ||||| Sbjct 120496 TTCGTCTGAAAATCCTGTTCCTATCTTACATATAGATTGGTA---TTGGTCGGATTCTGG 120552 Query 145595 ATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATA 145654 |||| | ||||| | | ||||||| |||||||||||||| || | || | || Sbjct 120553 ATCAAAGCATGCAAGTAAAAAGCCACCATAAACACCAGTACGTTTACCTCTTCCCTTGTA 120612 Query 145655 CCCCGCAATTGGTACAAGATCACAACTA-TCACCCATTCCGGCAAGATAATCCTTTTTAA 145713 || | || ||| | ||| | | | ||||| | || ||| ||||||||| |||| Sbjct 120613 GCCTCCGATAACTACCAAGTCA-ACCGAGTCACCTAACCCTTCAATATAATCCTTCTTAA 120671 Query 145714 GTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATA 145750 | |||| ||| |||| ||| | ||| || |||||||| Sbjct 120672 GCTTTAACCAGTTGAAAGACCTTTTTGAGGGTTCATA 120708 >seq102 Length=34929 Score = 138 bits (152), Expect = 3e-27 Identities = 395/595 (66%), Gaps = 28/595 (5%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | ||||| || || || |||||| || ||| ||||| | | ||| Sbjct 31997 TTTCCATTATTAACAACTAAAAGAGTATTTTGGAAAGGTGTTGCTAAAGAATTATTTTGG 32056 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTG--CAGCAAAAAATGTAAAAATTTGGG 111432 || ||| |||||||||||||| || || || | | | || || | | ||||||| Sbjct 32057 TTCATTTCTGGAAGTACAAATGCTAA--AATTTTATCTGAACAAGATATTCATATTTGGG 32114 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTG 111492 ||||||||||||| | || | | |||||||| | || ||| | ||||| | Sbjct 32115 ATGGAAATGGATCGAGAGAATATTTAGATTCATTGGGATTTGAGAATCGTGAAGAGATGG 32174 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACA--AAACCAT 111550 || | || || ||||| || ||||||||| | || |||| | || | | ||| || Sbjct 32175 ATTTGGGTCCTGTTTATGGTTTTCAATGGAGACA--TTGGGGTAGTTCATATGAAAATAT 32232 Query 111551 GCACGACTCATATGATTCACA---GGGAACTGATCAATTACAGAA-TGTCATTGATCAAA 111606 ||| || || || || | |||| ||||||||| |||| ||| ||||| || Sbjct 32233 GCATA---CAGATTATACAAATAAGGGAGTTGATCAATTGAAGAAATGT-ATTGA--AAC 32286 Query 111607 TT--AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 || ||||| || |||||| | | || ||||| | ||||||||| | | || Sbjct 32287 TTTAAAGAATAATCCAACTAATAGACGTATTATATTATCTGCATGGAATGTATCAGATTT 32346 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGG-- 111722 || |||||| | ||||| |||||| | ||||| || |||| ||| | || | Sbjct 32347 ACCTAATATGGCATTACCACCTTGTCATTTAATGTGTCAATTTTGGGTAGAT-ACAGATA 32405 Query 111723 ---ATGCTTTCA--TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGT 111777 ||| || | || ||||||||||| |||| |||||| || | |||||||| | Sbjct 32406 CTAATGAATTAAGTTGTCAAATGTATCAAAGATCATGTGATATGGGATTAGGTGTTCCAT 32465 Query 111778 TTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAAC 111837 ||||||||||| || || || | || | ||||| || || || ||| | |||| Sbjct 32466 TTAATATTGCATCATATGCTTTATTAACAAGATTAATGGCACAAGTTTGTAATTTAAAAC 32525 Query 111838 CGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892 | ||||| || ||||| | || ||| | |||||||| | || || ||||| Sbjct 32526 CTGGTGATTTTATTCATACATTGGGTGATACACATGTTTATAAGAATCATATTGA 32580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340507813088