Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq74 93.3 4e-14 seq38 89.7 5e-13 seq27 89.7 5e-13 seq52 84.2 2e-11 >seq74 Length=222118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| | || |||||||| | || || |||||||||| |||||||| | Sbjct 7936 CCTCCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCATTA 7877 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || | || | || |||| || || || || || || ||||| || || || | ||| Sbjct 7876 ATAGTTCTGCCA-TCTTCTAATTGTTTACCGGCATAAATCAAACGTTGTTGATCTGAAGG 7818 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || || || || || | | ||| ||||| ||| | || || || Sbjct 7817 AATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTGTCGTTTGATTCCAT 7758 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || |||| ||||||||||| | ||||| Sbjct 7757 TTCGATAGTAATGGTCTTTCCAGTTAAGGTTTTTACGAAGAGTTGCAT 7710 >seq38 Length=381539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || ||| || || | || || |||||||||||||| |||||| | Sbjct 330693 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGAATGTTATAATCGGAC 330634 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || | || || || || | || ||||| || || || || ||| Sbjct 330633 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 330574 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| || || ||||| | || | ||||| |||| |||| Sbjct 330573 ATTCCTTCTTTGTCTTGAATCTTACTCTTGACATTTTCAATTGTATCATTGGATTCGACT 330514 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || |||| ||||| |||||||| ||||| Sbjct 330513 TCCAAAGTGATAGTCTTTCCAGTTAATGTTTTAACGAAAATTTGCAT 330467 >seq27 Length=417575 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || || || || | ||| || |||||||| ||||||||||| | Sbjct 23477 CCACCTCTCAATCTCAATACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGAC 23536 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || | || || || ||| | || || | || || || |||||| Sbjct 23537 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGG 23596 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | || || ||||||||| Sbjct 23597 ATTCCTTCCTTATCTTGGATCTTAGACTTAACATTTTCAATTGTGTCATTGGACTCGACT 23656 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || |||| |||||| |||||||| ||||| Sbjct 23657 TCCAATGTAATGGTCTTTCCTGTTAAAGTTTTAACGAAAATTTGCAT 23703 >seq52 Length=331721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | || || || || | ||| || ||||||||||| || ||||| | | Sbjct 165533 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGATTCCTTTTGAATATTATAATCAGAT 165592 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| | | | || |||| || || || || | |||||||| || || || || || Sbjct 165593 AATGTTCTTCCA-TCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGG 165651 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| || || || || ||||| | || | |||||| |||| |||| Sbjct 165652 GATTCCTTCCTTATCTTGAATCTTAGACTTGACATTTTCAATAGTATCATTGGATTCGAC 165711 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || |||| ||||| |||||||| ||||| Sbjct 165712 TTCCAAAGTGATAGTCTTTCCAGTTAATGTTTTAACGAAAATTTGCAT 165759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008174274560