Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq37 87.8 1e-12 >seq37 Length=379849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780 |||| ||||| ||| | || || |||||||| | ||||| || | || ||| | | Sbjct 314408 CTCAATACCAAATGGACAGTTGAATCCTTTTGAAGATTGTAATCTGAGATAGTTCTACCA 314467 Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840 || ||||||||||| || |||||||| | || ||||| ||| || | || || || Sbjct 314468 TCTTCCAATTGTTTACCAGCATAAATCAAACGTTGTTGATCCGATGGAATTCCTTCCTTA 314527 Query 16841 TCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||| | || |||| | | | |||||| | |||||||| | || ||| Sbjct 314528 TCAAAAATCTTTTGTTTCATATTCTCAATAGTGTCATTCGATTCCGTTTCAATAGTAATG 314587 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || ||||| |||| ||||| ||||||| |||||| Sbjct 314588 GTCTTTCCTGTCAATGTTTTCACAAAAAGTTGCATT 314623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084129384160