Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq38 253 3e-62 seq9 244 1e-59 seq231 208 1e-48 seq62 187 3e-42 seq79 86.0 8e-12 >seq38 Length=381539 Score = 253 bits (280), Expect = 3e-62 Identities = 778/1191 (65%), Gaps = 18/1191 (2%) Strand=Plus/Minus Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG- 62483 |||| |||| || || |||| |||||| || ||| ||||| || || | ||| Sbjct 296241 TCCTTCATAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGG 296183 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 || | | ||||||||||| ||||| | | | || || | || ||||| || || | Sbjct 296182 CAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGA 296123 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 ||||| | | || || || || || || ||||||||||| | ||| || |||| Sbjct 296122 ATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTC 296063 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 | ||||| ||| | | |||||| | || |||||||| |||| ||||| | Sbjct 296062 TGTGTCTAAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCT 296003 Query 62664 TATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-- 62718 |||| | ||| || |||| ||||| || || | | || | |||| | Sbjct 296002 TATTCAAATTGTAAGTGGCAATC---TTGACAACTTCGTATAACTTTTGGTGATCATAGG 295946 Query 62719 -TCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 62774 | | ||| ||| ||| || | | |||| | || || ||||| || || | Sbjct 295945 TTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAA 295886 Query 62775 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 62834 | |||| || | | | | ||| || || ||||| || | ||| | |||||||||| | Sbjct 295885 CTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTAC 295826 Query 62835 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 62894 | | ||||||||||| ||| | ||||| | |||||| || | ||| |||| || Sbjct 295825 CAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACAC 295766 Query 62895 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 62954 |||||||||| || | ||| ||||| || ||||| || ||||||| || | | Sbjct 295765 CAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCT 295706 Query 62955 TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63014 || | ||||||||| ||| ||||| ||| | | ||| || || |||||||||| Sbjct 295705 TGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACAT 295646 Query 63015 TGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 63074 | || || || ||||| ||||| | | ||||| || | |||||||| || | Sbjct 295645 CAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACAC 295586 Query 63075 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 63134 ||| ||| |||||||| | ||| | | | | |||| |||||| | ||| ||| | Sbjct 295585 GTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTT 295526 Query 63135 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 63194 | || || ||||||| | | ||| | || | | ||| ||||| ||||| ||||||| Sbjct 295525 CCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCA 295466 Query 63195 AGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 63254 | || ||||| | | || | || || || ||||| | ||||| || |||| Sbjct 295465 AATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGT 295406 Query 63255 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATAT 63314 ||| ||||||||||||||||||| | |||||| ||||| || || || ||| || | Sbjct 295405 CATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGT 295346 Query 63315 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374 | |||| || | |||||| || ||| | ||| || || || || || || | Sbjct 295345 ATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAA 295286 Query 63375 TTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 63433 | | || || || |||| |||||||| || || | || ||||||| |||| | Sbjct 295285 TAAGGGCACA-AGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAA 295227 Query 63434 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63493 | || ||||| | |||||| || ||| || ||||| || || || ||||| Sbjct 295226 ACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAG 295167 Query 63494 GCGTGAGTAAACCATTTTTC-AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 || ||| |||| ||| | | |||| || || || | ||| ||| || || || Sbjct 295166 GCATGAATAAA-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTC 295108 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | | || || |||| |||||||| |||||||| || |||||||| Sbjct 295107 ACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 244 bits (270), Expect = 1e-59 Identities = 579/859 (67%), Gaps = 23/859 (3%) Strand=Plus/Minus Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 ||||| | | ||| ||||||||||||| | |||||||| |||| | |||| ||| Sbjct 333149 GATATGATATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCC-AAT 333091 Query 32481 TCAGAAATCAA---TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 32537 ||||| ||| |||||| || || | ||| |||||| || ||| | | || |||| Sbjct 333090 --AGAAACCAACAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTC 333033 Query 32538 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 32597 ||||| || | | |||||| | | || | | |||||| | ||||| || || Sbjct 333032 ATTCCAATCAAATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCT 332973 Query 32598 TCTGTTATAATAGATCTTACTGTTTCTTCAC-----TCGGTGGATACAATAAATGTTTAA 32652 || | || || ||| || || | | ||| || | ||||| || Sbjct 332972 TCATAAACAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTATT---TCAATGTGGAA 332916 Query 32653 -ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 | | |||||||||||||| |||| || || || | | || ||||| || || Sbjct 332915 TAGAGTAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAG 332856 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || | | || ||||| || ||||| || || | ||| || || || ||| |||| Sbjct 332855 AATGATAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCA 332796 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCT 32830 || ||||||||||| || || ||||| || | | ||| || || | | | | Sbjct 332795 GAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCA 332736 Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 | || ||||| || ||||| | || ||||||| || | || | ||| || || Sbjct 332735 GA-ATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAAT 332677 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAA-CATATGTATCAATCAAAAGAC 32949 |||| ||| ||| ||| |||| | ||||||| || | || ||||| | | || Sbjct 332676 GGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTAC 332618 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||||||||| | |||||| ||||||||||| ||||||||||| ||||| ||||| || | Sbjct 332617 TATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTT 332558 Query 33010 C-GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 | |||| | || |||| || ||| ||| || ||||||||| || ||||| ||| Sbjct 332557 CTGGTACT-TGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCA 332499 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTT-ATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 ||||||||||| || |||| || ||| || || |||| || ||| | | | ||||| Sbjct 332498 CTGGCTGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTT 332440 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 | ||| ||| | ||||| | | ||| || || ||||||||||| ||||| ||| Sbjct 332439 TTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCAT 332380 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 || |||||| ||||| | ||| || | | |||| |||| |||||| | |||||| | || Sbjct 332379 TGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATG 332320 Query 33248 TGGATTTTTTGCAAGGATT 33266 ||||||| | |||||| Sbjct 332319 AGGATTTTCTTTGAGGATT 332301 >seq231 Length=8293 Score = 208 bits (230), Expect = 1e-48 Identities = 305/421 (72%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909 ||||| | || ||||||| || | || | ||| || || |||| ||| ||| ||| Sbjct 1288 GCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTT 1229 Query 32910 ttttCATTACTATCTTTAA-CATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968 |||| | ||||||| || | || ||||| | | |||||||||||| | |||||| Sbjct 1228 CTTTCTCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTTCAGCATGAAT 1170 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC-GGTAATCTGTACTTCTG 33027 ||||||||||| ||||||||||| ||||| ||||| || || |||| | || |||| || Sbjct 1169 ATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACT-TGAACTTGTG 1111 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 ||| ||| || ||||||||| || ||||| |||||||| ||||| || |||| Sbjct 1110 CCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCA 1051 Query 33088 ATACATGTTTT-ATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATC 33145 || ||| || || |||| || ||| | | | ||| ||||| | ||| ||| | ||||| Sbjct 1050 GCAC-TGTCTTGATGAAATGTTGTTCAT-TAGAGTTGAGTTTTTCCCATTCAGTTATATC 993 Query 33146 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 33205 | | ||| || || ||||||||||| ||||| ||| || |||||| ||||| | Sbjct 992 AGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTC 933 Query 33206 CCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGAT 33265 ||| || | | |||| |||| |||||| | |||||| | || ||||||| | ||||| Sbjct 932 CCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTTCTTTGAGGAT 873 Query 33266 T 33266 | Sbjct 872 T 872 >seq62 Length=286411 Score = 187 bits (206), Expect = 3e-42 Identities = 409/603 (68%), Gaps = 10/603 (2%) Strand=Plus/Plus Query 32658 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 ||||| || ||||| ||||| || || || | |||||||| ||||| || | Sbjct 259943 AAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCC 260002 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 | || ||||| || ||||| || || | |||||| ||||| || || ||||| ||| Sbjct 260003 AAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAG 260062 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGC-AATAAGTCTCTCTCCATA-ACCGGCGCTGTCAT 32835 ||||| ||||| || |||||||| ||||| | || || | | | | | | Sbjct 260063 AAAATACCTTCAACACAAGCAAAGGCCAATAAACGT-TCGGCAAATAAATTCTCATTATT 260121 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 | ||||| || ||||||| |||||||||| |||| | || | || || || |||| Sbjct 260122 G-ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCAT 260180 Query 32896 TAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || | ||| || ||| || || | ||||| || | || ||||| | ||||| Sbjct 260181 TGAACAAACGAT-GTCTTTCTCTTTGATC-CTTTATCAAA-GTTTCAATGAGTGTACTAT 260237 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 ||||||| | ||| || |||||||| || ||||| || |||||||| ||||| || || | Sbjct 260238 ACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTG 260297 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 || ||||| || | |||| ||| ||||||||||| || || ||||| | Sbjct 260298 GTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACG 260357 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | ||||| || || || ||| || ||||| | || ||||| |||||| | | ||| Sbjct 260358 CAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCC 260417 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | | ||||| | | ||| |||||||| | ||||| || |||||| |||| Sbjct 260418 ATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCT 260477 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252 | |||||||| | ||| || | |||||| | || || | ||||| | | ||||| Sbjct 260478 TCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGAT 260537 Query 33253 TTT 33255 ||| Sbjct 260538 TTT 260540 >seq79 Length=326815 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 80784 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 80843 || || |||||||||||||| || ||||| || || | |||||||||||||| | Sbjct 192788 GTTATTGGTATTGATGAAGGTCAATTCTTCCCTGATTTGGTTGAATTCTGTGAAGCTGCT 192847 Query 80844 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGTACATTTCAACGTAAACCG 80903 || || | ||| ||||| || || || || | |||||||| || ||| | |||| Sbjct 192848 GCTAATGGAGGTAAAATTGTAATTGTTAGTGCTTTGGATGGTACTTTCCAAAGAAAACAA 192907 Query 80904 TTTAATAAT-ATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGT 80962 ||| ||| |||| || | ||||| | |||||| || || ||||| | || || Sbjct 192908 TTTGGAAATGTTCTTTCAT-TGGTTCCAATGGCTGAAAGTGTTGTGAAACTTAAGGCTGT 192966 Query 80963 GTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACG 81001 |||||| || ||| || ||| |||| |||||||| Sbjct 192967 TTGTATGGTTTGTGGTAAAGATGCTGCCTTCTCTAAACG 193005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625790406400