Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9 284 1e-71 seq62 199 4e-46 seq231 181 1e-40 >seq9 Length=695587 Score = 284 bits (314), Expect = 1e-71 Identities = 617/907 (68%), Gaps = 36/907 (4%) Strand=Plus/Minus Query 92809 TATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCA-- 92866 ||||| |||||||| || ||||| || ||||||||||| | |||||| ||||| Sbjct 333194 TATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGATATTCATC 333135 Query 92867 CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA--CAATAATC 92924 | | || |||||| | ||||||| ||||||| ||| | | | | ||| |||| Sbjct 333134 CAATCGAATGGATTTGATGAGTTATAAATCTTTTCAT--ATCCAATAGAAACCAACAATC 333077 Query 92925 TATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTA 92984 ||||||| || | ||| || || || ||| || || ||||||||| | | | | Sbjct 333076 TATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAAATCAA 333017 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | |||| | || | | || || ||||| || |||| ||||| | || | | | Sbjct 333016 CTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATA-AACAAGTGAA 332958 Query 93045 TTACTCTACTATTTG--GTGGTTTT-TGTACGACATAATTG--TACATTAAGCACGCAAA 93099 | | ||||| ||| || ||| |||| || | | || | ||| || || || Sbjct 332957 TGAA-CTACTTGTTGAGGTAATTTAGTGTATTTCAATGTGGAATAGAGTAAACATGCGAA 332899 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 || |||||||| ||||| || || |||||||| ||||| ||||| |||||| || | Sbjct 332898 ATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCAT 332839 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||| || |||||||| | ||| || |||||| |||||| ||||| || || || || || Sbjct 332838 CAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTC 332779 Query 93220 CACGGCTGCAAATGCCA-CAATACGTTCGGCAAA---ATTTGCGGAATTACTGCTGATCC 93275 ||| ||||||||||| |||| | ||| ||||| ||| | |||||| |||| Sbjct 332778 CACACATGCAAATGCCAACAAT-CTTTCAGCAAACAAATTCTCAGAATTA------ATCC 332726 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 |||| || ||||| | ||||| || | || | |||| ||| || || || | ||||| Sbjct 332725 ATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATA 332666 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA-----ATACAT 93390 | || || || || | | || | || | | || | |||| |||||| Sbjct 332665 GACGATTTCTTTC-TC----TTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACAT 332611 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||||| ||| | ||| || || |||||||| ||||| ||||||||||| ||||| | | Sbjct 332610 TTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTAC 332551 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACG-AGATTTTCATTGACTATACCATCGGATGCTG 93509 || |||| | ||| | | || |||||||||||||| || ||||| |||| Sbjct 332550 TTGAACTTGTGCCATGAAT-TGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTG 332492 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 |||| || |||| | ||| || ||||||| |||| | || || || ||||| | Sbjct 332491 CAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATT 332432 Query 93570 CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 | | || ||| | |||||| || || || || ||||| || || || || |||| Sbjct 332431 CAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTT 332372 Query 93630 TGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTAT 93689 ||||||| ||||| || | |||| |||| |||||| | |||||||||| ||| || | Sbjct 332371 TGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTT 332312 Query 93690 CTTTTAG 93696 |||| || Sbjct 332311 CTTTGAG 332305 >seq62 Length=286411 Score = 199 bits (220), Expect = 4e-46 Identities = 406/596 (68%), Gaps = 13/596 (2%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || || ||||| ||||| || || || || || |||||| ||||| Sbjct 259942 TAAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGC 260001 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 ||||| || | || || |||||||| | |||||| || ||| ||| |||||| || Sbjct 260002 CAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAA 260061 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATT 93264 || |||||||| || ||||| |||| | |||||||||||| ||| | ||| Sbjct 260062 GAAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTC---ATT 260118 Query 93265 ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGAT 93324 | || |||||||| | ||||||| || || || | | | | || | || || || Sbjct 260119 ATTG---ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAAT 260175 Query 93325 AGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA 93384 || || || | || || || ||| ||| | || || || | | Sbjct 260176 GGCATTGAACAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACT 260235 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 ||||||||||| ||||| ||| || || ||||||||||| |||||||||||||| ||||| Sbjct 260236 ATACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTC 260295 Query 93445 CGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || || || || | ||| | | || | |||||||||||| ||||| |||| Sbjct 260296 TGGTATTTGTACCTCAGCCATAAATTGTTGGCAC-AAATTTTCATTGACAATACCGTCGG 260354 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTA 93562 | || ||||| ||||| || | | ||| ||||| |||| || | | | ||| | Sbjct 260355 ACGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGG 260414 Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 | ||| | | | ||| | |||||| |||||||| ||||||| || ||||| Sbjct 260415 T-CCATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG 260473 Query 93623 GCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || || || ||||| ||||| || | | |||||| | || |||| ||||||||| Sbjct 260474 GCCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACG 260529 >seq231 Length=8293 Score = 181 bits (200), Expect = 1e-40 Identities = 362/529 (68%), Gaps = 23/529 (4%) Strand=Plus/Minus Query 93178 CCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCA- 93236 ||| || |||||| |||||| ||||| || || || || ||||| ||||||||||| Sbjct 1391 CCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAA 1332 Query 93237 CAATACGTTCGGCAAA---ATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 |||| | ||| ||||| ||| | |||||| |||||||| || ||||| | | Sbjct 1331 CAAT-CTTTCAGCAAACAAATTCTCAGAATTA------ATCCATTTCAATGCCCAGTTAG 1279 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCG 93353 |||| || | || | |||| ||| || || || | |||||| || || || || Sbjct 1278 CTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTC-TC-- 1222 Query 93354 AATCTCGTATGTATGTATCGATTAACAGAGA-----ATACATTTCAGAATGGACATTCTC 93408 | | || | || | | || | |||| ||||||||||| ||| | ||| || Sbjct 1221 --TTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTC 1164 Query 93409 CATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 || |||||||| ||||| ||||||||||| ||||| | | || |||| | || Sbjct 1163 AATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAA 1104 Query 93469 TCTCTCTACG-AGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATAT 93527 | | | || |||||||||||||| || ||||| || ||||| || |||| | Sbjct 1103 T-TGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTG 1045 Query 93528 GCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAA 93587 ||| || ||||||| |||| | || || || ||||| || | || ||| | || Sbjct 1044 TCTTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAA 985 Query 93588 GATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGT 93647 |||| || || || || ||||| || || || || ||||||||||| ||||| || | Sbjct 984 GATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATTT 925 Query 93648 CTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 |||| |||| |||||| | |||||||||| ||| || ||||| || Sbjct 924 TAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTTCTTTGAG 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855342764160