Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq84 82.4 6e-11 seq30 82.4 6e-11 >seq84 Length=160583 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||||||||| | || ||| | ||| | || ||||| |||| |||||||| Sbjct 128736 AACCTCCTCTCAGTCTCAACACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATC-A 128794 Query 33959 CCAATTG-TCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 | || || || | || |||||||| || || ||| | |||| || || ||||| Sbjct 128795 CTAACTGTTCTTCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAT 128854 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGAT 34074 || | | ||| || || | || ||||| || |||| || ||| ||||| | ||| Sbjct 128855 GGAATTCCCTCCTTATCAAATATCTTTTGTTTCAAATG---TTCAACAGTATCATTCGAT 128911 Query 34075 TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||| | || ||||| ||||| ||||| ||||| ||||| | ||||||| Sbjct 128912 TCCATTTCAATTGTAATTGTCTTTCCAGTTAGGGTTTTTACAAAAAGTTGCATT 128965 >seq30 Length=401612 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| | || ||||| ||| | || ||||| |||| ||||||||| | Sbjct 53629 ACCTCCTCTCAATCTCAACACCAAATGCACAGTAGAATCCTTTTGAAGGTTGTAATCA-C 53571 Query 33960 CAATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 |||||| || || || ||||| || || ||| | |||| || || ||||| | Sbjct 53570 TAATTGTTCTTCCATCTTCTAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAG 53511 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCAC-ACTATCAGTAGATTCG 34077 | | || || || || | || ||||| || || |||| | ||||| | | ||| Sbjct 53510 GAATGCCTTCCTTATCAAATATCTTTTGTTTCATATT-CTCAATAGTATCATTCGCTTCC 53452 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || ||||||||||| |||| ||||| ||||||| ||||||| Sbjct 53451 ATTTCAATAGTAATTGTTTTTCCAGTTAAGGTTTTTACAAAGAGTTGCATT 53401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397058606068768