Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq66 167 5e-36 seq8 138 2e-27 >seq66 Length=243952 Score = 167 bits (184), Expect = 5e-36 Identities = 265/371 (71%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 68418 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 68477 |||||||||||||| || |||||||||||||| | |||| |||||| ||||||||| Sbjct 55457 TCAGAGTTGTATGGCTTGGTACAAGAAATTCCTCAAAAAGAAACTACTCCATTTTATCCT 55516 Query 68478 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 68537 ||| ||||| | | || ||||||||| ||| ||||| || || || | || Sbjct 55517 CGATCTCCTTATGCTTGCGCTAAGTTGTACAGTTACTGGATTGTTATTAACTATAGAGAA 55576 Query 68538 TCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG- 68596 | |||||||||| | | || ||| ||||||||| || ||| | ||||| Sbjct 55577 GCTTATAACATGTTCGCCTTGAATGGTATTCTTTTCAATCATGAAAGTATCCGTAGAGGT 55636 Query 68597 CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT-TCAATGGTGTCG 68655 ||| | || || || | |||||||| | || || || |||| || | ||| | Sbjct 55637 CCAACCTTT-GTAACAAGAAAAATCACAATGGCAGTAGCTCGTATTCATCTA-GGTCTTC 55694 Query 68656 AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATT 68715 || | ||| ||||| | |||||| | ||||| ||||||||||||| | || ||||||| Sbjct 55695 AAGAGTGCTTGTATTTGGGTAATTTGGATGCTGAAAGAGATTGGGGCCACGCAAAGGATT 55754 Query 68716 ACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA-TGTGATTGCA 68774 |||| || || |||||||||||||| |||||||| | || ||||| |||| |||| Sbjct 55755 ACGTTGAGGCTATGTGGTTGATGCTCCAACAAGAGAAGCCATCAGACTATTGTG-TTGCC 55813 Query 68775 ACAGG-GAAAA 68784 || || ||||| Sbjct 55814 ACTGGAGAAAA 55824 Score = 145 bits (160), Expect = 2e-29 Identities = 288/416 (69%), Gaps = 8/416 (2%) Strand=Plus/Plus Query 68418 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 68477 || || |||||||| || |||||||| || || | |||| ||||| || |||||| Sbjct 115638 TCTGAATTGTATGGTTTGGTTCAAGAAATCCCCCAAAAAGAAACCACTCCTTTCTATCCT 115697 Query 68478 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA-AATTACCGTGA 68536 || ||||| | | |||||||||||| ||| ||||| ||| | ||||| | || Sbjct 115698 CGTTCTCCTTATGCTTGTGCAAAGTTGTATAGTTACTGGAT-TGTCATTAATTATAGAGA 115756 Query 68537 GTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 68596 | || ||||||| || | ||| ||| |||||||||||| ||| | ||||| Sbjct 115757 AGCTTACAACATGTTTGCTTTGAACGGAATTCTTTTCAATCACGAAAGTATTAGAAGAGG 115816 Query 68597 -CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCG 68655 ||| || || || || | || ||||| | || || || |||| ||| | Sbjct 115817 ACCAACATTT-GTAACCAGAAAGATCACTATGGCTGTTGCTCGTATTCATCTTGGATTGC 115875 Query 68656 AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATT 68715 || | || ||||| | |||||| | ||||| ||||||||||||| |||| ||||||| Sbjct 115876 AAGATTGTTTGTATTTGGGTAATTTGGATGCTGAAAGAGATTGGGGGCATGCCAAGGATT 115935 Query 68716 ACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA-TGTGATTGCA 68774 | || |||| |||||||||||||| |||||||| | || | || || |||| |||| Sbjct 115936 ATGTTAAAGCTATGTGGTTGATGCTTCAACAAGAAAAGCCAGCCGATTACTGTG-TTGCC 115994 Query 68775 ACAGG-GAAAACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATTCGGTGTTCTCG 68829 || || || || || || ||| | || || || ||| | || | |||||||| Sbjct 115995 ACTGGTGAGAAACACAAG-GTTAGAGAATTTGTTGAAAAATCTTTTGCTGTTCTCG 116049 >seq8 Length=938756 Score = 138 bits (152), Expect = 2e-27 Identities = 402/607 (66%), Gaps = 18/607 (3%) Strand=Plus/Minus Query 68235 TTGATTCATATAATCACCAAGATTCGTCCGGACGAAATCTACAATTTGGCCGCACAATCG 68294 |||||| || || |||||||| | || || ||||||||||| |||| || ||||| Sbjct 717875 TTGATTTCCATCATTTCCAAGATTAGACCAGATGAAATCTACAACTTGGGTGCTCAATCC 717816 Query 68295 TTTGTTCATGACAGTTTTAATCAAGCC-GAGGTGACTGCAAACGTAGATGCTCTCGGTGT 68353 |||| | | ||||||| | | ||| || ||||| || || |||| | | ||| Sbjct 717815 CATGTTAAAGTCAGTTTTGAA-ATGCCTGAATACACTGCCAATGTTGATGGTATTGGTAC 717757 Query 68354 TTTGCGTTTACTAGACGCCGTTCGTATATCGGGTGTC------AACTCTCGAATTTGCCA 68407 ||||||| | | || ||| ||||| | || | || || || | | || Sbjct 717756 TTTGCGTATTTTGGAAGCCATTCGTGCTTGTGGATTGGAAAAGAAGACTAGATTCTATCA 717697 Query 68408 AGC--GTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||| || | || || |||||||| ||| ||||||||||| || | |||| ||| Sbjct 717696 AGCTAGTACTAGT--GAATTGTATGGTTTAGTTCAAGAAATTCCACAAAAAGAAACCACT 717639 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || || ||||| || || || | | || ||||||||| ||||||||| || Sbjct 717638 CCATTCTATCCACGTTCTCCATATGCTTGCGCCAAGTTGTACAGTTATTGGATTGTTATC 717579 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 || || | || | || || |||| || | ||| ||| ||||||||| || ||| Sbjct 717578 AACTATAGAGAAGCTTACAATATGTTTGCTTTGAACGGAATTCTTTTCAATCATGAAAGT 717519 Query 68586 CCCAACAGAGG-CCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 | || ||| | || || || | || || || | || || || |||| Sbjct 717518 ATTCGTCGTGGTCCAACCTTT-GTTACAAGAAAGATTACTATGGCTGTTGCTCGTATTCA 717460 Query 68645 CAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 68704 || | || | ||| ||||| | |||||| | ||||| |||||||||||||| | Sbjct 717459 TCTCGGATTGCAAGATTGCTTGTATTTGGGTAATTTGGATGCTGAAAGAGATTGGGGACA 717400 Query 68705 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 68764 ||| ||||| || || ||||| |||||||||||||| |||||||| | || | || || Sbjct 717399 TGCTAAGGACTATGTTGAAGCCATGTGGTTGATGCTCCAACAAGAAAAGCCAGCCGATTA 717340 Query 68765 -TGTGATTGCAACAGG-GAAAACAACGAGCGTTCGTGAGTTCGTGAAAATGGCATTCGGT 68822 |||| |||| || || ||||| || | ||| | || || || ||| |||| | | Sbjct 717339 TTGTG-TTGCCACTGGTGAAAAACAC-AAAGTTAGAGAATTTGTTGAAAAATCATTTGCT 717282 Query 68823 GTTCTCG 68829 ||||||| Sbjct 717281 GTTCTCG 717275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102868921570400