Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq38 241 2e-58 seq62 141 1e-28 seq9 100 3e-16 seq8 82.4 9e-11 >seq38 Length=381539 Score = 241 bits (266), Expect = 2e-58 Identities = 686/1048 (65%), Gaps = 15/1048 (1%) Strand=Plus/Minus Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| || | |||||| |||||||| |||||||| | ||||| | ||| ||| | Sbjct 296098 CATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTAAAGTTACTCTTCTTGG 296039 Query 114345 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 114404 | || || || ||| ||||| |||| |||| | |||| | ||| | ||| ||| || Sbjct 296038 CTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAATTGTAAGTGGCAATCT 295979 Query 114405 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAG 114464 | | ||| | | ||||| || |||| | | |||| ||||||||||||||||| | Sbjct 295978 TGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTG 295919 Query 114465 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 114524 |||| || || || || ||||| |||| ||||| | |||| | || |||| Sbjct 295918 GAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAA 295859 Query 114525 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 114584 |||| |||||||| || ||| ||| ||||| || | ||| | |||||| || ||| | | Sbjct 295858 TTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTAT 295799 Query 114585 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 114644 |||| | ||||||||| | ||||||||| || || || |||||| | | ||||| Sbjct 295798 TACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAG 295739 Query 114645 CCTTCCAGACATC-GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC-CTCGTACTT 114702 | ||||| || | | || | | || ||||| | ||| ||| || || || Sbjct 295738 CAAACCAGAGTTCTTGAGCCTTG-ATGGTTCTCTTGGC-CTTTCCTTCTCTTTCATATTT 295681 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 114762 || || | | || ||||||||| | || | || ||| | || | || ||| Sbjct 295680 GGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTCATTTGG 295621 Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 |||||||| ||||||| || | |||| |||||| | ||||||||| || || ||| Sbjct 295620 ACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTTGACCCA 295561 Query 114823 GAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 114882 | | | |||| | ||| | | | |||||| | || ||||| | ||| || Sbjct 295560 TAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCTCAAATC 295501 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC- 114941 ||||||||| | || || | |||||| ||||||| || | || | | ||||| | Sbjct 295500 CAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTTCT 295441 Query 114942 --GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 || |||| | || | ||||| || || ||| |||| || || | | ||||||||| Sbjct 295440 CTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGGAAT 295381 Query 115000 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATG 115059 | ||||| ||| || ||||| || | ||| || | ||||| | || || Sbjct 295380 TAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATTGTG 295321 Query 115060 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 115119 | || ||||||||| || || |||| || || | || || | | || | | Sbjct 295320 AACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGTATC 295261 Query 115120 GTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGG 115179 || || || | || || ||| |||| | | | ||||| || ||||||||| Sbjct 295260 ATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTGTGG 295201 Query 115180 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC----TTGGG 115235 |||| |||||||| ||||| | ||||| | || || || |||||||| || | Sbjct 295200 AATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAACATACCACTACTGAG 295141 Query 115236 ACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 115295 | ||| ||||| | | | | |||||| | ||||| ||||| | | Sbjct 295140 TAA----ATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTGGATACCTAAACTTA 295085 Query 115296 CCCGCATAAACATGTATTGGGGTGTTTC 115323 | ||||||||||||| ||| ||| |||| Sbjct 295084 CACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq62 Length=286411 Score = 141 bits (156), Expect = 1e-28 Identities = 387/580 (67%), Gaps = 17/580 (3%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| | || || ||||||||||| | |||||| ||||| || || Sbjct 259948 GGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACC 260007 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| || ||||||||||| ||||| | ||| || ||||| |||||||| || Sbjct 260008 AGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAAT 260067 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225 || || ||||| || || || || | ||| || ||||| | | || || | Sbjct 260068 ACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTATTG---AT 260124 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| ||||| ||||| | ||||| || | | | | || || || | || || | || Sbjct 260125 CCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAA 260184 Query 126286 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 126345 | | ||||| | |||| || || | | || |||||| | ||| |||| Sbjct 260185 CAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTC 260244 Query 126346 GCCGTGGACCATTTCATTATGGCACT---GATACGCGTAGAAAGAGCGCGCTTCGCTTAT 126402 | |||| ||||| || ||| | || || |||||||| | | |||||| ||| Sbjct 260245 AGCATGGATATTTTCA--ATAGCAATTTGGAAAC-CGTAGAAACATCTCGCTTCTGGTAT 260301 Query 126403 CTGTACCTCATCGGCA-AAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCA 126460 ||||||||| | || |||||||| | ||| ||| ||||| || |||||| || Sbjct 260302 TTGTACCTCA--GCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCA 260359 Query 126461 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT-TCAGGGTCTTCCA 126519 ||||| || || | | | ||| || || | ||||| || | || ||| ||| |||| Sbjct 260360 GCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTT-TGGTGTCAAGGTGGTCCA 260418 Query 126520 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCT 126578 | || ||| | ||||| || || || |||||||| | | | || |||| Sbjct 260419 TTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG-GCCT 260477 Query 126579 TCTTATAGAGTTCCCAAAGGTGGGGATACTTCAGGGGGAA 126618 ||||||| | |||||||| | ||||| | || ||||| Sbjct 260478 TCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAA 260517 >seq9 Length=695587 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || || ||||| || || | |||||| ||||| | | || ||||| ||||| || ||| Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || ||||||||||| | |||||| || |||||||| |||||||||||||| || || Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 126185 GCAAAGAGACGCTCAGCAAA 126204 || || | | |||||||| Sbjct 332765 GCCAACAATCTTTCAGCAAA 332746 >seq8 Length=938756 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 8808 GCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAA 8867 || || || || |||||||| || |||||||||||||||||||||||| | | || ||| Sbjct 717419 GCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATGTGGTTGATGCTCCAA 717360 Query 8868 CAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 |||||| || | | ||| ||| || || || || || | |||| || || || || Sbjct 717359 CAAGAAAAGCCAGCCGATTATTGTGTTGCCACTGGTGAAAAACACAAAGTTAGAGAATTT 717300 Query 8928 GTTGA 8932 ||||| Sbjct 717299 GTTGA 717295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597347745934720