Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 4e-15 seq10 96.9 4e-15 seq52 93.3 5e-14 seq38 87.8 2e-12 seq27 87.8 2e-12 seq36 82.4 8e-11 seq18 82.4 8e-11 seq7 82.4 8e-11 >seq30 Length=401612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 41967 ATATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGA 42026 || || ||||| | ||||||||| || | |||||||||||||| || ||||||||| Sbjct 53643 ATGTTTATTTAACCACCTCCTCTCAATCTCAACACCAAATGCACAGTAGAATCCTTTTGA 53584 Query 42027 ATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGC 42086 | ||||||||| | || | | || |||| || || || || | || | ||| Sbjct 53583 AGGTTGTAATCACTAATTGTTCTTCCATCTTCTAATTGTTTTCCTGCATAAATCAATCGT 53524 Query 42087 TGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTG 42146 || || || | || | || ||||| || | || |||||||| | || | | || Sbjct 53523 TGTTGATCTGAAGGAATGCCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAATAGTA 53464 Query 42147 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 || ||| ||||| || | || || ||||| || |||| || |||||||||| |||| Sbjct 53463 TCATTCGCTTCCATTTCAATAGTAATTGTTTTTCCAGTTAAGGTTTTTACAAAGAGTTGC 53404 Query 42207 ATT 42209 ||| Sbjct 53403 ATT 53401 >seq10 Length=665159 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | || ||||||||||| || ||||||||||| || || |||| Sbjct 188400 ACCACCTCTTAATCTTAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCAGA 188459 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | ||||||||||| || || |||| || || || | || Sbjct 188460 GAGAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGG 188519 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| ||| || | | | | |||||| | ||||| || Sbjct 188520 GATTCCTTCCTTGTCTTGGATCTTTGACTTAACATTTTCAATAGTGTCGTTTGATTCAAC 188579 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 188580 TTCTAAAGTGATAGTCTTACCAGTCAAAGTCTTGACAAAGATTTGCAT 188627 >seq52 Length=331721 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| ||||||||||| || ||||||||||| || || || | Sbjct 185467 ACCACCTCTCAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGA 185408 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | || |||||||| || ||||||| || || || | ||| Sbjct 185407 GAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGG 185348 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| | |||| ||||| | | | |||||| | ||||| | Sbjct 185347 GATACCTTCCTTGT-CTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTGATTCAA 185289 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || || || || || |||| || || || || ||||||||| Sbjct 185288 CTTCCAATGTAATTGTCTTACCAGTTAATGTTTTAACGAAAATTTGCATT 185239 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG- 42039 ||| |||||||| | ||| ||||| ||||| || |||||||||||||||||||||| Sbjct 185695 ACCACCTCTTAATCTCAAAACCAAGTGCAAAGTTGATTCCTTTTGAATATTGTAATCAGA 185636 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||||| | | || |||| || |||||||| || || |||| || || || | || Sbjct 185635 TAAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTG 185576 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | | ||||| | | ||| |||| | |||| | | | || || | ||||| Sbjct 185575 GGATACCTTCCTTAT-CTTGAATTTTAGACTTGACATTTTCAATTGTATCATTGGATTCA 185517 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| ||||| || |||| || || || || |||||||| Sbjct 185516 ACTTCCAATGTGATTGTTTT-CCTGTTAAAGTTTTGACGAAAATTTGCAT 185468 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | ||| || |||||||| || || |||||||| || ||||||| Sbjct 165304 ACCACCTCTTAATCTCAAAACTAAATGCAAAGTTGATTCTTTTTGAATGTTATAATCAGA 165363 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || || | || |||||||| || || |||| || || || | ||| Sbjct 165364 TAATGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGG 165423 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||||| ||| |||| | |||| | | | ||||| | ||||| | Sbjct 165424 AATACCTTCCTTGTCT-TGAATTTTAGACTTGACATTTTCAATAGTGTCATTTGATTCAA 165482 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || || | || || |||||||||||||| Sbjct 165483 CTTCCAAAGTGATAGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 165531 >seq38 Length=381539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 41970 TTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATA 42029 ||| |||| ||| ||||| || | ||| || ||||| | || || ||||| ||| Sbjct 331161 TTATTTTAATTACCACCTCTCAATCTCAAAACTAAATGAAGAGTTGATTCTTTTTGGATA 331102 Query 42030 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 42089 |||||||||| || || | |||| ||||| || |||||||| ||||| |||| || Sbjct 331101 TTGTAATCAGACAATGTTCTTCCGTCTTCTAGTTGTTTACCAGCAAATATAAGTCTTTGT 331042 Query 42090 TGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC 42148 || || | ||| | | ||||| | | ||| | |||| |||| | | | || || Sbjct 331041 TGATCTGGTGGGATACCTTCCTTAT-CTTGAATCTTTGACTTGACATTTTCAATTGTATC 330983 Query 42149 GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || | || |||||||| || |||| || || || || |||||||| Sbjct 330982 ATTGGATTCAACTTCCAATGTAATGGTTTTACCAGTTAATGTTTTAACGAAAATTTGCAT 330923 >seq27 Length=417575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 41970 TTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATA 42029 || ||||| ||| ||||| || | ||| ||||| || | ||| ||||||||||| Sbjct 23237 TTTATTTAGTTACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATG 23296 Query 42030 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 42089 |||||||||| || || | | || |||| ||||||||||| || ||||||| || Sbjct 23297 TTGTAATCAGAAAGGGTTCTTCCATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGT 23356 Query 42090 TGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC 42148 || || | ||| | | ||||||| | ||| | |||| |||| | | | || || Sbjct 23357 TGATCTGGTGGAATACCTTCCTTGT-CTTGAATCTTTGACTTGACATTTTCAATAGTATC 23415 Query 42149 GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || | || || || || || || | || || || ||||||||||| Sbjct 23416 ATTAGATTCGACTTCAAGGGTAATTGTCTTACCAGTCAAAGTTTTGACGAAGATTTGCAT 23475 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | ||| || | ||| | || ||||||||||| |||||||| | Sbjct 23704 ACCACCTCTTAATCTCAAAACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCGGA 23763 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || |||| ||||||||||| || ||||||| || || || | || Sbjct 23764 TAATGTTCTTCCATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGATCTGGAGG 23823 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||| | ||| | |||| |||| | | | |||||| | ||||| | Sbjct 23824 GATTCCTTCTTTGT-CTTGAATCTTTGACTTGACATTTTCAATGGTGTCGTTTGATTCAA 23882 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || || | ||||| || ||||||||||| Sbjct 23883 CTTCTAAAGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 23931 >seq36 Length=416450 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | | ||| ||||| ||||| || |||||||| |||||||| || | Sbjct 87083 ACCACCTCTGAGTCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATATTGTAGTCTGA 87142 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || || | |||||||||||||| || | || || || || | || Sbjct 87143 GAGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGG 87202 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || |||| | | | |||||| | ||||| || Sbjct 87203 GATACCTTCCTTGTCTTGGATCTTAGACTTGACGTTTTCAATAGTGTCGTTGGATTCGAC 87262 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || || ||||| || || |||||||| Sbjct 87263 TTCCAAAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 87310 >seq18 Length=502116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||||||| | |||||||||||| | ||| || |||||||| ||||||||| Sbjct 87686 CCTCCTCTTAATCTCAACACCAAATGAAGAGTGGAGTCTTTTTGAATGTTGTAATCATTA 87745 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| | | || |||| || ||||| || || ||||||| || || || | || Sbjct 87746 ATAGTTCTGCCATCTTCTAATTGTTTACCTGCAAAGATGAGTCTTTGTTGATCTGGTGAA 87805 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| || | |||||||| | | | | | || | ||||| || Sbjct 87806 ATTCCTTCCTTATCTTGTACCTTTTGTTTCACATTTTCAATTGAATCATTAGATTCAACC 87865 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| ||| | || || || ||||| ||||| | ||||||| Sbjct 87866 TCCAAAGTGATAGTTCTTCCAGTGAGTGTCTTGACAAATAATTGCATT 87913 >seq7 Length=693645 Score = 82.4 bits (90), Expect = 8e-11 Identities = 164/242 (68%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 41968 TATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAA 42027 ||||| |||| | |||||||||||| | ||| || ||||||| || |||||||||| Sbjct 333891 TATTA-TTTAACAACCTCCTCTTAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAA 333833 Query 42028 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 42087 |||||||||| | ||| | | || || | || || || || | || | ||| | Sbjct 333832 GATTGTAATCACTAATAGTTCTTCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTT 333773 Query 42088 GCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGT 42147 | || || | || | | ||||| || | || |||||||| | || | || || | Sbjct 333772 GTTGATCTGAAGGGATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTAT 333713 Query 42148 CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 | | ||||||| || | || || || || || || | || |||||||| | ||||| Sbjct 333712 CATTTGATTCCATTTCAATAGTAATTGTGTTTCCTGTCAATGTTTTTACAAAAAGTTGCA 333653 Query 42208 TT 42209 || Sbjct 333652 TT 333651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207476514560