Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq30 91.5 1e-13 seq27 89.7 5e-13 seq84 84.2 2e-11 seq79 84.2 2e-11 seq7 82.4 7e-11 >seq30 Length=401612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||||||||| | ||||| || ||||||| |||||||| | || || | Sbjct 53619 AATCTCAACACCAAATGCACAGTAGAATCCTTTTGAAGGTTGTAATCACTAATTGTTCTT 53560 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| |||| |||||||| || || |||||||| || ||||| | ||| ||||| ||| Sbjct 53559 CCATCTTCTAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAGGAATGCCTTCC 53500 Query 127016 TTGTC 127020 || || Sbjct 53499 TTATC 53495 >seq27 Length=417575 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | ||||| || | || || || ||||||||||||||||| | Sbjct 23933 CCACCTCTTAATCTGAGGACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAATCAGAC 23992 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | ||||| |||||| | ||||||| || ||||| ||||| Sbjct 23993 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGA 24052 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||||| ||| | | ||| | |||||| | || ||| Sbjct 24053 ATACCTTCCTTATCTTGAATTTTGCTCTTAACGTTTTCAATGGTGTCATTGGATTCAACT 24112 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || | ||||| || ||||| ||||| Sbjct 24113 TCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACGAAAATTTGCAT 24159 >seq84 Length=160583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || |||||| ||||| | || || || ||||||| ||||||||| | | || | Sbjct 128749 TCTCAACACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACTAACTGTTCTTCC 128808 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | |||||||| || || |||||||| || ||||| | || || |||||||| Sbjct 128809 ATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGATGGAATTCCCTCCTT 128868 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || || || || || | ||||| || || || | || | ||| | || | Sbjct 128869 ATCAAATATCTTTTGTTTCAAATGTTCAACAGTATCATTCGATTCCATTTCAATTGTAAT 128928 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||||||||||| ||||| Sbjct 128929 TGTCTTTCCAGTTAGGGTTTTTACAAAAAGTTGCAT 128964 >seq79 Length=326815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | || ||| ||||| || | || || || ||||||||||||||||| | Sbjct 172728 CCACCTCTAAGTCTCAAAACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 172787 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG-TAGATCAATCGCTGCTGATCGGGAGG 127005 | || | | ||| || | || || |||||| ||||||||| || ||||| ||||| Sbjct 172788 AAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAAGATCAATCTTTGTTGATCTGGAGG 172847 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| | | ||| | | || ||||| | ||| | |||||| | || | Sbjct 172848 GATACCTTCCTTAT-CTTGAATCTTTGACTTGACATTTTCAATGGTGTCGTTTGATTCAA 172906 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || |||| ||| || || ||||| ||||| Sbjct 172907 CTTCCAGAGTGATTGTCTTACCAGTCAAAGTCTTGAC-AAAATTTGCAT 172954 >seq7 Length=693645 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| ||| || ||||||| || || || ||||||| ||||||||| | || || | Sbjct 371255 AATCTCAATACTAAATGTACAGTTGAATCCTTTTGAAGATTGTAATCACTAATTGTTCTG 371196 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| |||| |||||||| || || |||||||| || ||||| | ||| || || ||| Sbjct 371195 CCATCTTCTAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAGGAATACCTTCC 371136 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || || || || || || | | || || || || | || | ||| | || Sbjct 371135 TTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTTGATTCCATTTCAATAGTA 371076 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || | ||||||||||||| ||||| Sbjct 371075 ATTGTCTTTCCAGTTAAGGTTTTTACAAAAAGTTGCAT 371038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496140092160