Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq38 235 7e-57 seq62 158 1e-33 seq9 100 3e-16 seq8 86.0 8e-12 >seq38 Length=381539 Score = 235 bits (260), Expect = 7e-57 Identities = 685/1048 (65%), Gaps = 15/1048 (1%) Strand=Plus/Minus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| || | |||||| |||||||| |||||||| | ||||| | ||| ||| | Sbjct 296098 CATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTAAAGTTACTCTTCTTGG 296039 Query 116306 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 116365 | || || || ||| ||||| |||| |||| | |||| | ||| | ||| ||| || Sbjct 296038 CTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAATTGTAAGTGGCAATCT 295979 Query 116366 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAG 116425 | | ||| | | ||||| || |||| | | |||| ||||||||||||||||| | Sbjct 295978 TGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTG 295919 Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485 |||| || || || || ||||| |||| ||||| | |||| | || |||| Sbjct 295918 GAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAA 295859 Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545 |||| |||||||| || ||| ||| ||||| || | ||| | |||||| || ||| | | Sbjct 295858 TTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTAT 295799 Query 116546 TACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 116605 |||| | ||||||||| | ||| ||||| || || || |||||| | | ||||| Sbjct 295798 TACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAG 295739 Query 116606 CCTTCCATACATC-GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC-CTCGTACTT 116663 | ||| | || | | || | | || ||||| | ||| ||| || || || Sbjct 295738 CAAACCAGAGTTCTTGAGCCTTG-ATGGTTCTCTTGGC-CTTTCCTTCTCTTTCATATTT 295681 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGG 116723 || || | | || ||||||||| | | || | || ||| | || | || ||| Sbjct 295680 GGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTCATTTGG 295621 Query 116724 ACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 116783 ||||||||| ||||||| || | |||| ||| || | ||||||||| || || ||| Sbjct 295620 ACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTTGACCCA 295561 Query 116784 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 | || |||| | ||| | | | |||||| | || ||||| | ||| || Sbjct 295560 TAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCTCAAATC 295501 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC- 116902 ||||||||| | || || | |||||| ||||||| || | || | | ||||| | Sbjct 295500 CAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTTCT 295441 Query 116903 --GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 || |||| | || | ||||| || || || | || || || | | ||||||||| Sbjct 295440 CTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGGAAT 295381 Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTG 117020 | ||||| ||| || ||||| || | ||| || ||||| | || ||| Sbjct 295380 TAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATTGTG 295321 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 | || ||||||||| || || |||| || || | || || | | || | | Sbjct 295320 AACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGTATC 295261 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 || || |||| || || ||| |||| | | | |||||| || ||||||||| Sbjct 295260 ATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTGTGG 295201 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC----TTGGG 117196 |||| |||||||| ||||| | ||||| | || || || |||||||| || | Sbjct 295200 AATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAACATACCACTACTGAG 295141 Query 117197 ACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 | ||| ||||| | | | | |||||| | ||||| ||||| | | Sbjct 295140 TAA----ATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTGGATACCTAAACTTA 295085 Query 117257 CCCGCATAAACATGTATTGGGGTGTTTC 117284 | ||||||||||||| ||| ||| |||| Sbjct 295084 CACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq62 Length=286411 Score = 158 bits (174), Expect = 1e-33 Identities = 392/580 (68%), Gaps = 19/580 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | || || ||||||||||| | |||||| ||||| || ||| Sbjct 259949 GCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCA 260008 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| || ||||||||||| ||||| | ||| || || ||||||||||| || Sbjct 260009 GGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATA 260068 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 || || ||||| || || || |||| ||| |||||||| | || ||| | | Sbjct 260069 CCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAA---ATTCTCATTATTGATC 260125 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 || ||||| ||||| ||||||| || | | | |||| || || | || || | || Sbjct 260126 CATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAAC 260185 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 127819 | | ||||| | |||| || || | | || |||||| | ||| |||| Sbjct 260186 AAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTCA 260245 Query 127820 CCGTGGACCATTTCATTATGGCACT---GATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 | |||| ||||| || ||| | || || |||||||| | | |||||| ||| Sbjct 260246 GCATGGATATTTTCA--ATAGCAATTTGGAAAC-CGTAGAAACATCTCGCTTCTGGTATT 260302 Query 127877 TGTACCTCATCGGCA-AAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 ||||||||| | || |||||||| | ||| ||| ||||| || |||||| ||| Sbjct 260303 TGTACCTCA--GCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAG 260360 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT-TCAGGGTCTTCCAG 127993 |||| || || | | | ||| || || | ||||| || | || ||| ||| |||| Sbjct 260361 CAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTT-TGGTGTCAAGGTGGTCCAT 260419 Query 127994 TCGTCGAGATC-CTTTGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCT 128051 | | ||| | ||| ||||| || || || |||||||| | | | || |||| Sbjct 260420 TGTGTAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG-GCCT 260477 Query 128052 TCTTATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 128091 ||||||| | |||||| | | ||||| | || ||||| Sbjct 260478 TCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAA 260517 >seq9 Length=695587 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || || ||||| || || | |||||| ||||| | | ||| ||||| ||||| || ||| Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || ||||||||||| | |||||| ||||||||||| || ||||||||||| || || Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 127658 GCAAA 127662 || || Sbjct 332765 GCCAA 332761 >seq8 Length=938756 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 10723 GCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAA 10782 || || || || |||||||| || |||||||||||||||||||||||| | | |||||| Sbjct 717419 GCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATGTGGTTGATGCTCCAA 717360 Query 10783 CAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 |||||| || | | ||| ||| || || || || || | |||| || || || || Sbjct 717359 CAAGAAAAGCCAGCCGATTATTGTGTTGCCACTGGTGAAAAACACAAAGTTAGAGAATTT 717300 Query 10843 GTTGA 10847 ||||| Sbjct 717299 GTTGA 717295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501187629440