Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq27 136 9e-27 seq30 105 2e-17 seq52 100 7e-16 seq38 100 7e-16 seq10 100 7e-16 seq79 93.3 1e-13 seq87 91.5 3e-13 >seq27 Length=417575 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||||| |||||||| || |||||||| | |||||| || | || || ||||| Sbjct 23716 TCTCAAAACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTTCTTCC 23775 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || || |||||||| | || || || ||| ||||||||| Sbjct 23776 ATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGATCTGGAGGGATTCCTTCTTT 23835 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| ||| || ||| | |||||| ||| ||| || || || ||||| Sbjct 23836 GTCTTGAATCTTTGACTTGACATTTTCAATGGTGTCGTTTGATTCAACTTCTAAAGTGAT 23895 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||| || || || ||||| Sbjct 23896 AGTCTTACCAGTCAAAGTCTTGACGAAGATTTG 23928 Score = 113 bits (124), Expect = 1e-19 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| || || || |||||||| | ||||| |||| ||| || ||||| Sbjct 23944 TCTGAGGACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTTCC 24003 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || ||||| || | | || || || ||| ||| ||||| Sbjct 24004 ATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 24063 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| ||| ||| | |||||| | | ||| || ||||| || || Sbjct 24064 ATCTTGAATTTTGCTCTTAACGTTTTCAATGGTGTCATTGGATTCAACTTCCAAGGTAAT 24123 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 || ||||| || | ||||| || |||||||| ||||||| Sbjct 24124 AGTTTTACCAGTTAATGTTTTAACGAAAATTTG---CATTTTA 24163 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||||||||| || |||||||| | |||||| |||| | || ||||| Sbjct 23260 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTTCTTCC 23319 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || || |||||||| | || || || || ||| ||||| Sbjct 23320 ATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGAATACCTTCCTT 23379 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| ||| || ||| | || || | | ||| || || | || || Sbjct 23380 GTCTTGAATCTTTGACTTGACATTTTCAATAGTATCATTAGATTCGACTTCAAGGGTAAT 23439 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | |||||| || || ||||| Sbjct 23440 TGTCTTACCAGTCAAAGTTTTGACGAAGATTTG 23472 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| || || || |||||||||| |||||| |||| ||| || ||||| Sbjct 23488 TCTCAATACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGACAAGGTTCTTCC 23547 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || ||||| || | | || || || ||| |||||||| Sbjct 23548 ATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGGATTCCTTCCTT 23607 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| || ||| | ||||| | | || || ||||| || || Sbjct 23608 ATCTTGGATCTTAGACTTAACATTTTCAATTGTGTCATTGGACTCGACTTCCAATGTAAT 23667 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | |||||| || |||||||| Sbjct 23668 GGTCTTTCCTGTTAAAGTTTTAACGAAAATTTG 23700 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| || ||||||||||| || || ||||||||||| Sbjct 23810 AAAGACTCATCTTTGCTGGTAAGCAATTAGAAGATGGAAGAACATTATCCGATTACAACA 23751 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 | || || || || ||||| || |||||||||||| Sbjct 23750 TTCAAAAGGAATCAACTCTCCATCTTGTTTTGAGA 23716 >seq30 Length=401612 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || ||||| || || ||||| | |||||| ||| | ||| ||||| Sbjct 53389 TCTCAACACCAAATGAAGAGTTGAATCTTTTTGAATGTTGTAATCATTAATAGTTCTTCC 53330 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || ||||| | |||||||| | || || || || |||||||||| Sbjct 53329 ATCTTCCAATTGTTTTCCACCAAAGATGAGTCTTTGTTGATCTGGTGAAATTCCTTCCTT 53270 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| ||| || ||| | | || ||| ||| || ||||| ||||| Sbjct 53269 TTCTTGAATCTTTGACTTGACATTTTCAATTGAATCATTTGATTCAACTTCCAAAGTGAT 53210 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| | ||| Sbjct 53209 TGTTTTTCCAGTGAGTGTCTTGACAAATAATTG 53177 >seq52 Length=331721 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || | ||| || || ||||| | ||| || |||| || || ||||| Sbjct 165316 TCTCAAAACTAAATGCAAAGTTGATTCTTTTTGAATGTTATAATCAGATAATGTTCTTCC 165375 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || || ||||| || | || || || || ||| ||||| Sbjct 165376 ATCTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTT 165435 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| || ||| | ||||| ||| ||| || ||||| ||||| Sbjct 165436 GTCTTGAATTTTAGACTTGACATTTTCAATAGTGTCATTTGATTCAACTTCCAAAGTGAT 165495 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | |||||| ||||| ||||| Sbjct 165496 AGTCTTACCAGTCAAAGTTTTGACAAAGATTTG 165528 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || | ||| || |||||||| | ||| ||||| | | ||| ||||| Sbjct 185455 TCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAGAGAGTTCTTCC 185396 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || || |||||||| | || || || || || ||||| Sbjct 185395 ATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGGATACCTTCCTT 185336 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| || || ||| | ||||| ||| ||| || ||||| || || Sbjct 185335 GTCTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTGATTCAACTTCCAATGTAAT 185276 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||||| || |||||||| Sbjct 185275 TGTCTTACCAGTTAATGTTTTAACGAAAATTTG 185243 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| || || || |||||||| | || || |||| || || ||||| Sbjct 165544 TCTGAGGACCAAGTGAAGGGTTGATTCCTTTTGAATATTATAATCAGATAATGTTCTTCC 165603 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || || || || | ||| || || || || |||||||| Sbjct 165604 ATCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTT 165663 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || ||| | || || | | ||| || ||||| ||||| Sbjct 165664 ATCTTGAATCTTAGACTTGACATTTTCAATAGTATCATTGGATTCGACTTCCAAAGTGAT 165723 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | ||||| || |||||||| Sbjct 165724 AGTCTTTCCAGTTAATGTTTTAACGAAAATTTG 165756 >seq38 Length=381539 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| | ||| || |||||||| | ||| || || | ||| || ||||| Sbjct 330682 TCTCAACACCAAGTGCAAAGTAGATTCCTTTTGAATGTTATAATCGGACAAGGTTCTTCC 330623 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || || || || | ||| || || || || ||||||||| Sbjct 330622 ATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTT 330563 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || ||| | || || | | ||| || ||||| ||||| Sbjct 330562 GTCTTGAATCTTACTCTTGACATTTTCAATTGTATCATTGGATTCGACTTCCAAAGTGAT 330503 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | ||||| || |||||||| Sbjct 330502 AGTCTTTCCAGTTAATGTTTTAACGAAAATTTG 330470 >seq10 Length=665159 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| || || || |||||||| | || ||||||| | || ||||| Sbjct 188640 TCTGAGGACCAAGTGAAGGGTTGATTCCTTTTGAATATTATAGTCAGAAAGGGTTCTTCC 188699 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || ||||| || | ||| || || || ||| ||| ||||| Sbjct 188700 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 188759 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || ||| | || || | | ||| || || || ||||| Sbjct 188760 ATCTTGAATCTTGCTCTTAACATTTTCAATAGTATCGTTGGATTCAACTTCTAAAGTGAT 188819 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | ||||| || |||||||| Sbjct 188820 AGTCTTTCCTGTTAATGTTTTAACGAAAATTTG 188852 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||||| || ||||| || |||||||| | || || || | || || ||||| Sbjct 187956 TCTCAAAACAAGATGAAGAGTTGATTCCTTTTGAATATTATAATCGGATAATGTTCTTCC 188015 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || ||||| || | ||| || || || ||| || ||||| Sbjct 188016 ATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGGATACCTTCCTT 188075 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| || || ||| | || || | | ||| || ||||| || || Sbjct 188076 ATCTTGAATCTTTGATTTGACATTTTCAATAGTATCATTGGATTCAACTTCCAATGTAAT 188135 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | ||||| || |||||||| Sbjct 188136 TGTCTTTCCTGTTAATGTTTTGACGAAAATTTG 188168 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| | ||| || |||||||| | ||||| |||| || || ||||| Sbjct 188184 TCTCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTGTAATCAGATAAGGTTCTTCC 188243 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || || || || | | || || || || |||||||||| Sbjct 188244 ATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTCTTT 188303 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| || ||| || ||| | || || ||| ||| || || | ||||| Sbjct 188304 GTCTTGAATTTTAGACTTGACATTTTCAATAGTATCATTTGATTCAACTTCAAGAGTGAT 188363 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| || |||||||| Sbjct 188364 AGTTTTACCAGTGAGTGTTTTAACGAAAATTTG 188396 >seq79 Length=326815 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||| || || ||||| ||||||||||| || |||||| | |||||||| Sbjct 172605 AAAGACTTATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGATTACAATA 172546 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 | || || || || ||||| ||| | |||||||||||| || Sbjct 172545 TTCAAAAGGAATCCACTCTCCACTTGGTTTTGAGACTTAGA 172505 >seq87 Length=138333 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || ||||| || |||||||| | ||||| ||| | | ||| ||||| Sbjct 126364 TCTCAATACTAAATGAAGAGTTGAATCCTTTTGAAGATTGTAATCACCAATAGTTCTTCC 126305 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || ||||| | |||||||| | || || || || |||||||||| Sbjct 126304 ATCTTCCAATTGTTTTCCACCAAAGATGAGTCTTTGTTGATCTGGTGAAATTCCTTCCTT 126245 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || | ||| ||||| ||| | | || | | ||| || ||||| ||||| Sbjct 126244 ATCTTGTACTTTTCTTTTCACATTTTCAATTGAATCATTAGATTCAACTTCCAAAGTGAT 126185 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | || ||||| ||||| ||||| | ||| Sbjct 126184 AGTTCTTCCAGTGAGTGTTTTGACAAATAATTG 126152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178909757732528