Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq36 98.7 1e-15 seq54 93.3 5e-14 seq79 91.5 2e-13 >seq36 Length=416450 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | | ||| |||| ||||| ||| |||||||||||||||||||| || Sbjct 87084 CCACCTCTGAGTCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATATTGTAGTCTGAG 87143 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || | ||||| || ||||| ||||| | || || || | || Sbjct 87144 AGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGG 87203 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| ||||| | | | |||||| | ||||| || Sbjct 87204 ATACCTTCCTTGTCTTGGATCTTAGACTTGACGTTTTCAATAGTGTCGTTGGATTCGACT 87263 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || || || || || || |||||||| Sbjct 87264 TCCAAAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 87310 >seq54 Length=310422 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || || || | | || || | ||||| || ||||| Sbjct 138186 TCCTTTTGGATATTGTAGTCAGAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAA 138245 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | || || || | || | | |||||||| |||||| ||||| | Sbjct 138246 ATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTT 138305 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| || |||| || || || || || |||| |||||||| Sbjct 138306 TCAATGGTGTCGTTTGATTCGACTTCCAAGGTAATTGTCTTACCAGTCAATGTTTTAACG 138365 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 138366 AAGATTTGCAT 138376 >seq79 Length=326815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | ||| |||| |||||| ||| |||||||| || || ||||| || Sbjct 172956 CCACCTCTCAATCTCAAAACCAAATGCAAAGTAGATTCCTTTTGAATGTTATAGTCTGAG 173015 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || | ||||| || || || ||||| | || || || | || Sbjct 173016 AGGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGG 173075 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||||| |||| | | | | |||||| | ||||| || Sbjct 173076 ATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCAATGGTGTCGTTTGATTCAACT 173135 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| || || ||||| || |||| |||||||| ||||||||||| || Sbjct 173136 TCCAAGGTAATAGTTTTACCGGTCAAAGTTTTAACGAAGATTTGCATCTT 173185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232860663680