Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq38 109 4e-19 seq165 107 1e-18 seq81 107 1e-18 seq74 107 1e-18 seq48 107 1e-18 seq42 107 1e-18 seq28 107 1e-18 seq30 105 5e-18 seq10 102 6e-17 seq52 91.5 1e-13 seq37 89.7 4e-13 seq14 89.7 4e-13 seq7 89.7 4e-13 >seq38 Length=381539 Score = 109 bits (120), Expect = 4e-19 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| |||||||| ||| ||||| || |||||||||| | Sbjct 330693 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGAATGTTATAATCGGAC 330634 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| ||||||||||| || ||||||| ||||| || ||||| | || Sbjct 330633 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 330574 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | | | ||| || | ||| || Sbjct 330573 ATTCCTTCTTTGTCTTGAATCTTACTCTTGACATTTTCAATTGTATCATTGGATTCGACT 330514 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGT 39726 |||||||| || || || || ||||| ||||| ||||| || |||| |||||| Sbjct 330513 TCCAAAGTGATAGTCTTTCCAGTTAATGTTTTAACGAAAATTTGCA--TCGTGT 330462 >seq165 Length=11935 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| | Sbjct 10112 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 10171 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| || ||| || |||| || || || ||||| || || Sbjct 10172 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 10231 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || |||| |||||||| || || | || || || | || || ||| Sbjct 10232 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATT-CCAT 10290 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||||||||||||| || | ||||| Sbjct 10291 TTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCAT 10338 >seq81 Length=182562 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| | Sbjct 52390 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 52331 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| || ||| || |||| || || || ||||| || || Sbjct 52330 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 52271 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || |||| |||||||| || || | || || || | || || ||| Sbjct 52270 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATT-CCAT 52212 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||||||||||||| || | ||||| Sbjct 52211 TTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCAT 52164 >seq74 Length=222118 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| Sbjct 7936 CCTCCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCATTA 7877 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || |||||||| ||| || |||| ||||| || ||||| || || Sbjct 7876 ATAGTTCTGCCATCTTCTAATTGTTTACCGGCATAAATCAAACGTTGTTGATCTGAAGGA 7817 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||| |||||||| || || | || ||||| ||||| Sbjct 7816 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTGTCGTTTGATTCCATT 7757 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || || || ||||| ||||||||||||| ||||| Sbjct 7756 TCGATAGTAATGGTCTTTCCAGTTAAGGTTTTTACGAAGAGTTGCAT 7710 >seq48 Length=342059 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| | Sbjct 178224 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 178165 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| || ||| || |||| || || || ||||| || || Sbjct 178164 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 178105 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || |||| |||||||| || || | || || || | || || ||| Sbjct 178104 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATT-CCAT 178046 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||||||||||||| || | ||||| Sbjct 178045 TTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCAT 177998 >seq42 Length=358576 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| | Sbjct 95071 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 95012 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| || ||| || |||| || || || ||||| || || Sbjct 95011 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 94952 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || |||| |||||||| || || | || || || | || || ||| Sbjct 94951 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATT-CCAT 94893 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||||||||||||| || | ||||| Sbjct 94892 TTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCAT 94845 >seq28 Length=413107 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| | Sbjct 235287 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 235228 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| || ||| || |||| || || || ||||| || || Sbjct 235227 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 235168 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || |||| |||||||| || || | || || || | || || ||| Sbjct 235167 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTCGATT-CCAT 235109 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||||||||||||| || | ||||| Sbjct 235108 TTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCAT 235061 >seq30 Length=401612 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || |||||||||| ||| || ||||| | || ||||| | Sbjct 53628 CCTCCTCTCAATCTCAACACCAAATGCACAGTAGAATCCTTTTGAAGGTTGTAATCA--C 53571 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || | | | |||| || |||||||| || || |||| || || || ||||| || | Sbjct 53570 TAATTGTTCTTCCATCTTCTAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAG 53511 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCC 39669 | | |||||| || || |||| |||||||| || || | | || || | ||||| || Sbjct 53510 GAATGCCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAATAGTATCATTCGCTT-CC 53452 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||||||||| || ||||| |||||||| |||| ||||| Sbjct 53451 ATTTCAATAGTAATTGTTTTTCCAGTTAAGGTTTTTACAAAGAGTTGCAT 53402 >seq10 Length=665159 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| | Sbjct 273072 CCACCTCTCAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACCA 273131 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| |||||||| || ||| || |||| || || || ||||| || || Sbjct 273132 ATAGTTCTTCCATCTTCCAATTGCTTACCGGCATAAATCAATCGTTGTTGATCTGAAGGA 273191 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || |||| |||||||| || || | || || | | || || ||| Sbjct 273192 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTAGCATTCGATT-CCAT 273250 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||||||||||||| || | ||||| Sbjct 273251 TTCAATAGTGATTGTCTTTCCAGTTAAAGTTTTTACAAAAAGTTGCAT 273298 >seq52 Length=331721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || |||||||||||||| ||| ||||| || ||||| || | Sbjct 185466 CCACCTCTCAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAG 185407 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||||||||| || |||| || | | || ||||| | || Sbjct 185406 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGG 185347 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGT-GTCTGCGCTTTCC 39669 | ||||| ||||| | || ||| | | || || || ||| || || ||| Sbjct 185346 ATACCTTCCTTGTCTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTG---ATTCA 185290 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 185289 ACTTCCAATGTAATTGTCTTACCAGTTAATGTTTTAACGAAAATTTGCAT 185240 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | | |||||||||||||| ||| ||||| |||||||| || | Sbjct 185922 CCACCTCTCAATCTTAAAACCAAATGCAAAGTTGATTCCTTTTGAATATTATAGTCTGAG 185863 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||||||||| || |||| || | | || ||||| | || Sbjct 185862 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 185803 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || ||| ||||| | | | ||| || | || || Sbjct 185802 ATACCTTCCTTATCTTGAATCTTTGATTTAACATTTTCAATTGTATCATTGGACTCGACT 185743 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||| || || ||||||||||| ||||| || ||||| Sbjct 185742 TCCAATGTAATTGTCTTTCCTGTTAAAGTTTTGACGAAAATTTGCAT 185696 >seq37 Length=379849 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||||||| | ||| || ||||| | ||| ||||| | Sbjct 314396 CCACCTCTCAATCTCAATACCAAATGGACAGTTGAATCCTTTTGAAGATTGTAATCTGAG 314455 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| ||||||||||| || || |||| ||||| || |||||||| || Sbjct 314456 ATAGTTCTACCATCTTCCAATTGTTTACCAGCATAAATCAAACGTTGTTGATCCGATGGA 314515 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC-TGCGCTTTCCAC 39671 | ||||| || || | || |||||||| || || | | ||||| | || |||| Sbjct 314516 ATTCCTTCCTTATCAAAAATCTTTTGTTTCATATTCTCAATAGTGTCATTCG-ATTCCGT 314574 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || || || || || ||||| || || | ||||| Sbjct 314575 TTCAATAGTAATGGTCTTTCCTGTCAATGTTTTCACAAAAAGTTGCAT 314622 >seq14 Length=782252 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||| | || ||| ||||||| ||| || ||||| | ||| ||||| Sbjct 722732 GCCTCCTCTCAATCTCAATACTAAATGCACAGTTGAGTCCTTTTGAAGATTGTAATCATT 722791 Query 39552 CAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 || | |||| ||| ||||||||||| || || |||| || || || ||||| | Sbjct 722792 ---AATG-GTTCTGCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTG 722847 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 | || | |||||||| || |||| |||||||| || || | || || || || Sbjct 722848 AAGGAATACCTTCTTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCACTCGATT 722907 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| || | |||||||| || || ||||| |||||||| Sbjct 722908 CCATTTCAATTGTAATTGTCTTTCCAGTTAAGGTTTTTAC 722947 >seq7 Length=693645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || | || ||| ||||||| ||| || ||||| | ||| ||||| Sbjct 333878 CCTCCTCTTAATCTCAATACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACTA 333819 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||||||||| || || |||| || || || ||||| || || Sbjct 333818 ATAGTTCTTCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAGGG 333759 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||| |||||||| || || | || || || ||||| Sbjct 333758 ATACCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCATTTGATTCCATT 333699 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||||||| || || || || |||||||| || | ||||| Sbjct 333698 TCAATAGTAATTGTGTTTCCTGTCAATGTTTTTACAAAAAGTTGCAT 333652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366280883472