Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 1e-14 seq231 91.5 1e-13 >seq27 Length=417575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || || ||||| || | || |||||| ||| Sbjct 23703 ATGCAAATTTTCGTTAAAACTTTAACAGGAAAGACCATTACATTGGAAGTCGAGTCCAAT 23644 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| || |||| || || || ||||| || | || ||| Sbjct 23643 GACACAATTGAAAATGTTAAGTCTAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAA 23584 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| ||| || ||||| |||| || | | ||| | || |||||| Sbjct 23583 CAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGAAGAACCTTGTCTGATTACAAC 23524 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || ||||| ||||| || | |||||||| || Sbjct 23523 ATCCAAAAGGAATCAACCCTGCACTTGGTATTGAGATTGAGAGGTGG 23477 >seq231 Length=8293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 216/324 (67%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 || || ||||| || ||||||||| | || | || || ||||| |||||||| || Sbjct 1204 GTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCA 1145 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC-AGATTTTC 133289 || || || | || || || || |||| | ||| | | ||| |||||||| Sbjct 1144 TAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGTT-GACATAGATTTTC 1086 Query 133290 GTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTC 133349 ||||| || || || ||||| || || ||||||||||| |||||||||||| | || Sbjct 1085 ATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTC 1026 Query 133350 GTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGT 133409 || ||| | ||||| || | || || || || |||||||| || || Sbjct 1025 ATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGT 966 Query 133410 CCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAA 133469 ||| || || ||| | ||||||||||| |||||| | | ||| || | ||||| Sbjct 965 CCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAA 906 Query 133470 AATCACAAACCGGCGGGGGTTTTC 133493 | ||||| || | || ||||| Sbjct 905 GAGAACAAAACGATGAGGATTTTC 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167898306560