Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq38 196 6e-45 seq9 116 4e-21 seq62 89.7 6e-13 >seq38 Length=381539 Score = 196 bits (216), Expect = 6e-45 Identities = 644/990 (65%), Gaps = 11/990 (1%) Strand=Plus/Minus Query 110065 TCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAACACATCCGCTAGACCCTGAACACC 110123 ||||||| ||||| ||||||| || || ||| |||| || | ||| |||||||| Sbjct 296135 TCTTCACTTTCGAATGGAAGACGCATCTTGATGAAAG-CATCGGCCAAACCTTGAACACC 296077 Query 110124 GAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGT-TTCTACGGGGTAAAAGT 110182 ||||||||| || | || | | |||| | || | | ||| || |||||| | | Sbjct 296076 GAGACCAATTGGTCTGTGTCTAAAGTTACT-CTTCTTGGCTTCTTCGACTGGGTAATAAT 296018 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT 110242 | || || | | ||| | ||| | || || |||| | ||| | | || | Sbjct 296017 TCTTATCAATAATCTTATTCAAATTGTAAGTGGCAATCTTGACAACTTCGTATAACTTTT 295958 Query 110243 CGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGAT 110302 || ||| | |||| || || | ||||||||| || || ||||||||| ||||| | Sbjct 295957 GGTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGT 295898 Query 110303 TGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAAC 110362 | || |||| | || || | || |||| | |||||| ||||||||||| ||| Sbjct 295897 TACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAG 295838 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 ||| ||| ||| | ||| | ||||| ||||| || || | |||||| || | || Sbjct 295837 ACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACA 295778 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGG 110482 |||||||| ||||||||| | || | | | ||| || ||| | || || Sbjct 295777 TGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCT 295718 Query 110483 GGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 || ||| || || ||||| || || ||||| || || | | ||||| | Sbjct 295717 TGATGGTTCTCTTGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTT 295658 Query 110543 GTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCAC 110602 || | ||||||| |||||| | || | | ||||||||||| ||||| | || Sbjct 295657 CACCCCAAACATCAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCAT 295598 Query 110603 CCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-G 110661 | |||| ||| | | |||||| || || | ||| | || |||| | || | | Sbjct 295597 CATCCTTAACACGTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAG 295538 Query 110662 CAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAG 110721 | || ||||| | ||| || || | | ||||||||||| | || || ||| Sbjct 295537 CTCTGATT-TCTTCCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAG 295479 Query 110722 TGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACA 110778 ||||| ||||| | ||| | || | || ||||| | || ||| | || | ||| Sbjct 295478 TGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACA 295419 Query 110779 TAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTT 110838 || | || ||| ||||||| || || | ||| ||||| | |||| ||| || ||| Sbjct 295418 TATCTGGCAGTGTCATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTT 295359 Query 110839 GTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCC 110898 ||||| ||||| || | || | ||| | ||| | || |||||||||||| Sbjct 295358 GTACCTCTAATGTATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCA 295299 Query 110899 GCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATC 110957 || |||| ||| | ||||| ||| | || ||| |||||||||||| ||| ||||| Sbjct 295298 GCAGACTTGGAAATAAGGGCACAAGTCT-TAAGGGTATCATAAATACCATGAATGGAATC 295240 Query 110958 TGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAA 111017 |||| | | || || || |||||| ||| || ||| || || || |||||||| Sbjct 295239 ATCCTTCATAGAAACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAA 295180 Query 111018 GAGTGTAGGTGTCGCATGAATGAACAGACC 111047 | ||| || | |||||||| |||| ||| Sbjct 295179 CAATGTTGGAGAGGCATGAATAAACATACC 295150 >seq9 Length=695587 Score = 116 bits (128), Expect = 4e-21 Identities = 382/578 (66%), Gaps = 18/578 (3%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 || || ||| ||| | ||||||||| ||||| || | |||||| ||| | | ||| Sbjct 332903 GCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCA 332844 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || || | |||||||| ||| || || | ||||||||||||||| ||||| || Sbjct 332843 GGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATT 332784 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAA--AAGGTC-GAGACTTGTCGAAC 119672 ||||||||||| || || || || | | ||||||| || || ||| || | | Sbjct 332783 CCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGAATT---AATC 332727 Query 119673 CACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAA 119732 || || | |||||||| || || | | | || || || | ||||| | || Sbjct 332726 CATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAAT 332667 Query 119733 AGTTGCTTCTTTTCAGCACCATCCTTAAT-ATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 || | || |||| || ||||| | | || |||||||| || || | || Sbjct 332666 AGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTT-TCAATGAGAGTACTATACATTTC 332608 Query 119792 ACCATGAACCATTTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTG 119851 | |||||| ||||| || ||| | |||| || | | ||||| | | ||| Sbjct 332607 AGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTG 332548 Query 119852 CACTTCGTCAGCAA--AATTGTTG-TTGATATTTTCAAAAACAATTCCATCGGATCCAGC 119908 |||| || || | |||||||| | ||||||| ||||||||||| | || Sbjct 332547 AACTT-GT--GCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGC 332491 Query 119909 GAAGAATGCTAAGA-TGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGT 119967 ||||| || | | ||| ||| ||||| | ||||||||| |||||| ||| ||| | Sbjct 332490 AAAGAAGGCCAGCACTGT-CTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATT 332432 Query 119968 CGTCCATATCTTTAGACAAG-TCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTT 120026 | ||||| | | ||| || ||||| || |||||||| || | || |||| Sbjct 332431 CAGTTATATCAGT-GTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTT 332373 Query 120027 TTATAGAGTTCCCAAAGTTCAGGATACTTCAGGGGAAA 120064 || || | |||||| | || |||||| | || ||||| Sbjct 332372 TTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAA 332335 >seq62 Length=286411 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCCAGGCATGAGTCCTCTTTT 119572 |||||||| || ||||| | ||||| ||| || || ||||||||||| || | ||| Sbjct 259967 CCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAA-CCAGGCATGAGACCACGTTT 260025 Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632 ||| | |||||| |||| ||| ||| ||||| ||||| || || || ||||| || || Sbjct 260026 CTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATACCTTCAACACAAGCAAA 260085 Query 119633 AGCGAATAGACGCTCAGCAAA 119653 || |||| ||| || ||||| Sbjct 260086 GGCCAATAAACGTTCGGCAAA 260106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970228035200