Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq38 161 1e-34 seq62 145 9e-30 seq9 107 2e-18 seq8 91.5 2e-13 seq66 84.2 3e-11 >seq38 Length=381539 Score = 161 bits (178), Expect = 1e-34 Identities = 670/1051 (64%), Gaps = 21/1051 (2%) Strand=Plus/Minus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || | |||||||||||| | |||||| |||||||||| | ||| ||| | Sbjct 296098 CATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTAAAGTTACTCTTCTTGG 296039 Query 106338 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 | || || || ||| |||| | ||||| | || | ||| | || |||||| Sbjct 296038 CTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAATTGTAAGTGGCAATCT 295979 Query 106398 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTG 106457 | | ||| | | |||| | |||| | || |||| ||||||||||||||||||| Sbjct 295978 TGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTG 295919 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 |||| || || || | || || ||||| ||||| | | || | || | || Sbjct 295918 GAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAA 295859 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 |||| ||||||||||| ||| ||| || || || | || | ||| || ||| | | Sbjct 295858 TTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTAT 295799 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 | || | ||||||||| | |||||| || || || || | || | | | ||| | Sbjct 295798 TACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAG 295739 Query 106638 CCTTCCACACATCG-GCGGCTGGTACAATGGCG---TTGGCCCGTCCCTCCGCCTCGTAC 106693 | ||| | || | | || | |||| |||||| ||| || || || Sbjct 295738 CAAACCAGAGTTCTTGAGCCTTG----ATGGTTCTCTTGGCCTTTCCTTCTCTTTCATAT 295683 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 106753 || || || | | || || |||||| | || | |||||| | || | | | Sbjct 295682 TTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTCATTT 295623 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 |||||||| || ||||||| || | |||| ||| || | |||||| || || | | Sbjct 295622 GGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTTGACC 295563 Query 106814 CACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 || | | || | ||||||| | | || ||||| | ||| || || || || Sbjct 295562 CATAAACCCAAGAATAAATCTCTAGCTCTGATT-TCTTCCTTACCGTGATTCTTTCTCAA 295504 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 || | || || | || || | |||||| || || | ||| | || | | ||||| Sbjct 295503 ATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTT 295444 Query 106933 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 || || ||| |||||| ||||| | || ||| | || || || | | |||||| Sbjct 295443 TCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGG 295384 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 ||| | ||||| |||| || ||||| || | ||| ||| | ||||| | || Sbjct 295383 AATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATT 295324 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | || |||||||| ||||| |||| || || | ||||| | |||| || Sbjct 295323 GTGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGT 295264 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 |||| ||||| | || || || ||||| | | | ||||| ||| ||| || Sbjct 295263 ATCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTG 295204 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC----TT 107225 || |||| |||||||||||||| | ||||| | || ||||| |||||||| | Sbjct 295203 TGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAACATACCACTACT 295144 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 | | | || || || | | | | |||||||| | |||||||| || | Sbjct 295143 GAGTAA----ATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTGGATACCTAAAC 295088 Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTC 107316 |||||||||||||||| ||| ||| |||| Sbjct 295087 TTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq62 Length=286411 Score = 145 bits (160), Expect = 9e-30 Identities = 383/577 (66%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| | || ||||| ||||| || | |||||| ||||| | || Sbjct 259948 GGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACC 260007 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| || |||||||||||| |||| | ||||| || || |||||||| || Sbjct 260008 AGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAAT 260067 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA 117452 ||| || ||||| ||||| || || | || ||||| || | | || | | | Sbjct 260068 ACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAA---ATTCTCATTATTGAT 260124 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||||||||| ||||| |||||||| | | | |||| ||||| | ||||| | || Sbjct 260125 CCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAA 260184 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 117572 || | | |||| | |||||| || | | ||||| | | | ||| |||| Sbjct 260185 CAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTC 260244 Query 117573 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 |||| | ||||| || ||| ||| | ||||||| | | |||||| ||| Sbjct 260245 AGCATGGATATTTTCA--ATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATT 260302 Query 117631 TGCACTTCATCCGCAAAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 || || ||| || |||||||| | ||| ||| ||||| || |||||| |||| Sbjct 260303 TGTACCTCAGCC-ATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGC 260361 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTC 117749 |||||| || | | ||| || || | | ||| ||| ||| ||| |||| | Sbjct 260362 AAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCCATTG 260421 Query 117750 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTT 117808 || ||| || | |||||||||||| |||||||| | | | || ||||| | Sbjct 260422 TGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG-GCCTTCT 260480 Query 117809 TATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAA 117845 |||| | |||||| | | |||||| | || ||||| Sbjct 260481 TATACATTTCCCAAATCTTTGGATATTCGAGAGGGAA 260517 >seq9 Length=695587 Score = 107 bits (118), Expect = 2e-18 Identities = 368/563 (65%), Gaps = 17/563 (3%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || ||||| || || || | |||||| ||||| ||| || ||||| ||||| || ||| Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || ||||| |||| | || || || |||||||| || ||||||||||| ||||| Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || || | | || || || | | || | | || |||||||| |||||| || Sbjct 332765 GCCAACAATCTTTCAGCAAACAA---ATTCTCAGAATTAATCCATTTCAATGCCCAGTTA 332709 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 117531 || ||||| | || ||||||| || | ||||| | ||||| | || |||| | Sbjct 332708 GCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTT 332649 Query 117532 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCATTA 117591 || ||||| | ||||| | | ||| |||| |||||| ||||| | Sbjct 332648 TGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCA--A 332591 Query 117592 TGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAAT 117649 ||||| |||| || | ||||| | | ||||| || || |||| | | ||| Sbjct 332590 TGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTT-GTGCCATGAAT 332532 Query 117650 TGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGA-TGTA 117707 |||| | | ||| ||| ||||||||||| | |||||||| ||||| | ||| Sbjct 332531 TGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCACTGT- 332473 Query 117708 CTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAA 117767 ||| ||||| | | |||||| ||| || | | ||| || | ||| || | Sbjct 332472 CTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAG 332413 Query 117768 ATCAACTTCTTCCGCAGTCCA-ATTG--CTCATTTGAGCCTTTTTATAGAGTTCCCAGAG 117824 |||||| || ||| | ||||| | || |||| | |||||| || | |||||| | Sbjct 332412 ATCAACCTCCTCCACTGTCCAGAATGAAGCCATT---GTCTTTTTGTACATTTCCCACAT 332356 Query 117825 TTGTGGATACTTCAGGGGGAAGA 117847 || ||||| | || || |||| Sbjct 332355 TTTAGGATAATGAAGTGGAAAGA 332333 >seq8 Length=938756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 7173 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATG 7232 |||||||| | | || || ||||||||||| || || ||||||||||||||||||||| Sbjct 717434 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATG 717375 Query 7233 TGGCTCATGCTTCAACAAGAGGAAGCC-GACGAATATGTAGTAGCAACGGGTGA 7285 ||| | ||||| |||||||| ||||| | ||| ||| || || || ||||| Sbjct 717374 TGGTTGATGCTCCAACAAGA-AAAGCCAGCCGATTATTGTGTTGCCACTGGTGA 717322 >seq66 Length=243952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 7173 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATG 7232 |||||||| | | || || ||||||||||| || || ||||| |||||| |||| ||| Sbjct 115890 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGGCATGCCAAGGATTATGTTAAAGCTATG 115949 Query 7233 TGGCTCATGCTTCAACAAGAGGAAGCC-GACGAATA-TGTAGTAGCAACGGGTGAGA 7287 ||| | |||||||||||||| ||||| | ||| || ||| || || || ||||||| Sbjct 115950 TGGTTGATGCTTCAACAAGA-AAAGCCAGCCGATTACTGT-GTTGCCACTGGTGAGA 116004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975018188160