Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq106 91.5 2e-13 seq48 91.5 2e-13 seq31 91.5 2e-13 seq19 91.5 2e-13 seq16 91.5 2e-13 seq220 87.8 2e-12 seq91 87.8 2e-12 seq87 87.8 2e-12 seq80 87.8 2e-12 seq57 87.8 2e-12 seq51 87.8 2e-12 seq47 87.8 2e-12 seq20 87.8 2e-12 seq18 87.8 2e-12 seq6 87.8 2e-12 >seq106 Length=20111 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 12005 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 12064 Query 129370 CCCCATAACTCCATT 129384 ||| || |||||||| Sbjct 12065 CCCTATGACTCCATT 12079 >seq48 Length=342059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 71419 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 71360 Query 129370 CCCCATAACTCCATT 129384 ||| || |||||||| Sbjct 71359 CCCTATGACTCCATT 71345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 73560 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 73501 Query 129370 CCCCATAACTCCATT 129384 ||| || |||||||| Sbjct 73500 CCCTATGACTCCATT 73486 >seq31 Length=396166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 328192 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 328133 Query 129370 CCCCATAACTCCATT 129384 ||| || |||||||| Sbjct 328132 CCCTATGACTCCATT 328118 >seq19 Length=467654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 342157 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 342098 Query 129370 CCCCATAACTCCATT 129384 ||| || |||||||| Sbjct 342097 CCCTATGACTCCATT 342083 >seq16 Length=536960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 406756 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 406815 Query 129370 CCCCATAACTCCATT 129384 ||| || |||||||| Sbjct 406816 CCCTATGACTCCATT 406830 >seq220 Length=8532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 8074 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 8133 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 8134 CCCTATGACTCCA 8146 >seq91 Length=87372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 50142 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 50083 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 50082 CCCTATGACTCCA 50070 >seq87 Length=138333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 68050 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 67991 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 67990 CCCTATGACTCCA 67978 >seq80 Length=196593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 69002 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 69061 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 69062 CCCTATGACTCCA 69074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 70310 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 70369 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 70370 CCCTATGACTCCA 70382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 71296 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 71355 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 71356 CCCTATGACTCCA 71368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 136211 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 136152 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 136151 CCCTATGACTCCA 136139 >seq57 Length=309005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 11494 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 11435 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 11434 CCCTATGACTCCA 11422 >seq51 Length=333733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 139375 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 139316 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 139315 CCCTATGACTCCA 139303 >seq47 Length=339217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 326147 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 326088 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 326087 CCCTATGACTCCA 326075 >seq20 Length=441990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 155240 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 155299 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 155300 CCCTATGACTCCA 155312 >seq18 Length=502116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 403307 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 403248 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 403247 CCCTATGACTCCA 403235 >seq6 Length=707703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 129310 GGGGTTATAGCTCAACTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTTTGGGGTTCGAGT 129369 |||||||||||||| |||||||||| |||||||||| |||| |||| | |||||||| | Sbjct 280842 GGGGTTATAGCTCAGTTGGTAGAGCGTCTGCTTTGCATGCAGAAGGTCTAGGGTTCGATT 280783 Query 129370 CCCCATAACTCCA 129382 ||| || |||||| Sbjct 280782 CCCTATGACTCCA 280770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610390818111360