Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq19 95.1 1e-14 >seq19 Length=467654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 ||||| | |||||||| | || ||||| ||||||||||| || ||||| || ||| | Sbjct 349865 AATCCAGGCTGGTACACTCCATATACTCCATATCAAGCTGAAATCTCTCAAGGTAGACTT 349806 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 ||| | | || ||||| ||||| | || | || | || || | ||||| || || Sbjct 349805 GAATCACTCTTGAATTATCAAACAATGATTTCTGATTTGACTGGTCTTCCAATCGCTAAT 349746 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || || |||||||| |||||||| || ||||| ||| Sbjct 349745 GCTTCACTTTTGGATGAAGCTACTGCAGCTGCTGAAGCTATG 349704 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 153759 GGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTT 153818 |||||| ||||| |||||| |||| | || ||||| ||||| ||||| ||||| Sbjct 349376 GGTAGTGCTCAAAGATTTGGTGTTCCACTCGGTTATGGTGGTCCAAGTGCTGGTTTCTTG 349317 Query 153819 GCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGAT 153878 | | || | |||||||||| || || || |||||| | ||| || ||| Sbjct 349316 TCTGTTAAGGATGATTATAAGAGAATTATTCCAGGTAGAATTATTGGTATCTCTAAGGAT 349257 Query 153879 AGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGA 153938 | ||||||| | || | | || || || |||||||| || || || || | Sbjct 349256 GCTCAAGGTAAGACTGCTCTTCGTATGGCTCTCCAAACTAGAGAACAACACATTAGACGT 349197 Query 153939 GACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTC 153998 || || || ||||||||||| || || ||||| || || ||||||||||| | | Sbjct 349196 GATAAGGCCACCAGTAACATTTGTACTGCTCAAGCTCTCTTGGCTAATATGGCCTCTATG 349137 Query 153999 TATGCAGCATATCATGGTGCA 154019 ||||| | ||||||||| || Sbjct 349136 TATGCTGTTTATCATGGTCCA 349116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207123714560