Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 1e-15 >seq19 Length=467654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 ||||| | |||||||| | || ||||| ||||||||||| || ||||| || ||| | Sbjct 349865 AATCCAGGCTGGTACACTCCATATACTCCATATCAAGCTGAAATCTCTCAAGGTAGACTT 349806 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||| | | || ||||| ||||| | || | || | || || || || || || || Sbjct 349805 GAATCACTCTTGAATTATCAAACAATGATTTCTGATTTGACTGGTCTTCCAATCGCTAAT 349746 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTGTTAGCATATAATTC 158120 || || || || |||||||| |||||||| || ||||| || |||||| | |||||| | Sbjct 349745 GCTTCACTTTTGGATGAAGCTACTGCAGCTGCTGAAGCTATGGCTGTTTG-TTATAATGC 349687 Query 158121 T 158121 | Sbjct 349686 T 349686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 158434 GGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTT 158493 |||||| ||||| |||||| |||| | || || || ||||| ||||| ||||| Sbjct 349376 GGTAGTGCTCAAAGATTTGGTGTTCCACTCGGTTATGGTGGTCCAAGTGCTGGTTTCTTG 349317 Query 158494 GCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGAT 158553 | | || | |||||||||| || || || |||||| | ||| || ||| Sbjct 349316 TCTGTTAAGGATGATTATAAGAGAATTATTCCAGGTAGAATTATTGGTATCTCTAAGGAT 349257 Query 158554 AGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGA 158613 ||||||| | || | | || || || |||||||| || || || ||| | Sbjct 349256 GCTCAAGGTAAGACTGCTCTTCGTATGGCTCTCCAAACTAGAGAACAACACATTAGACGT 349197 Query 158614 GACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTC 158673 || || || ||||||||||| || || || ||||| || ||||||||||| | | Sbjct 349196 GATAAGGCCACCAGTAACATTTGTACTGCTCAAGCTCTCTTGGCTAATATGGCCTCTATG 349137 Query 158674 TATGCAGCATATCATGGTGCA 158694 ||||| | ||||||||| || Sbjct 349136 TATGCTGTTTATCATGGTCCA 349116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045437098240