Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq79 111 1e-19 seq7 111 1e-19 seq52 95.1 8e-15 seq37 87.8 1e-12 >seq79 Length=326815 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || || ||||| ||||| |||||||||| || ||| || |||||||||||||| Sbjct 172269 TTACCACCTCTCAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTATAGTCA 172328 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 |||||| ||| |||| |||| || || || ||||| || |||| ||| || ||| | Sbjct 172329 GAAAGGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGT 172388 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || ||||| || |||||| || || | | || | ||| | || Sbjct 172389 GGAATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCAATAGTATCATTAGATTCG 172448 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || || || ||||||||||| || ||||| |||||| Sbjct 172449 ACTTCAAGGGTAATTGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCATA 172499 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| ||||||||||| || | || ||| || |||||||||||||| || Sbjct 172956 CCACCTCTCAATCTCAAAACCAAATGCAAAGTAGATTCCTTTTGAATGTTATAGTCTGAG 173015 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| |||| |||| || || || ||||| || | || ||| || ||| | || Sbjct 173016 AGGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGG 173075 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || |||||| || || | | || | || | ||||| Sbjct 173076 ATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCAATGGTGTCGTTTGATTCAACT 173135 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| || ||||| || || | ||| || || ||||| ||||| || Sbjct 173136 TCCAAGGTAATAGTTTTACCGGTCAAAGTTTTAACGAAGATTTGCATCTT 173185 >seq7 Length=693645 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| ||||| ||||| |||| |||| ||||| ||||||||||| || Sbjct 371038 TTCCTCCTCTCAATCTCAATACCAAATGAAGTGTGGAGTCTTTTTGAATGTTATAATCAT 370979 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || ||| |||| |||| ||||| || ||| | || |||| ||| || ||| | | Sbjct 370978 TAATAGTTCTGCCATCTTCCAATTGTTTACCTGCATAGATGAGTCTTTGTTGTTCTGGTG 370919 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || |||||| |||||| | | || || ||| | |||| Sbjct 370918 GAATTCCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATTGAATCATTAGATTCAA 370859 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || ||||| ||||| ||||| | ||||| Sbjct 370858 CTTCCAATGTGATGGTTTTACCAGTGAGTGTCTTGACAAATAATTGCAT 370810 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | ||| ||||| ||||| |||| |||| ||||| ||||||||||| || Sbjct 333652 TTCCTCCTCGCAATCTCAATACCAAATGAAGTGTGGAGTCTTTTTGAATGTTATAATCAT 333593 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || ||| |||| |||| ||||| |||||| | || |||| ||| || ||| | | Sbjct 333592 TAATAGTTCTGCCATCTTCCAATTGTTTACCGGCATAGATGAGTCTTTGTTGTTCTGGTG 333533 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || || ||| ||| || | | || || ||| | |||| Sbjct 333532 GAATTCCTTCCTTATCTTGAACCTTTCTTTTAACATTTTCAATTGAATCATTAGATTCAA 333473 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || ||||| ||||| || || | ||||| Sbjct 333472 CTTCCAATGTGATGGTTTTACCAGTGAGTGTCTTGACGAATAATTGCAT 333424 >seq52 Length=331721 Score = 95.1 bits (104), Expect = 8e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| ||||||||||| || | || ||| || |||||||||||||| || Sbjct 185466 CCACCTCTCAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAG 185407 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| |||| ||||| || ||||| || |||| ||| || ||| | || Sbjct 185406 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGG 185347 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC 34906 | || |||||||| |||||| |||||| Sbjct 185346 ATACCTTCCTTGTCTTGAATCTTTGATTTGAC 185315 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || || || |||||||| || || | || |||||| ||||||||||| || || Sbjct 165305 CCACCTCTTAATCTCAAAACTAAATGCAAAGTTGATTCTTTTTGAATGTTATAATCAGAT 165364 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| |||| ||||| || ||||| || |||| ||| || ||| | || Sbjct 165365 AATGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 165424 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||| || ||||| | | || | ||| | ||||| Sbjct 165425 ATACCTTCCTTGTCTTGAATTTTAGACTTGACATTTTCAATAGTGTCATTTGATTCAACT 165484 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || || || || | ||| || |||||||| |||||| Sbjct 165485 TCCAAAGTGATAGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCATA 165532 >seq37 Length=379849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-- 34810 ||||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||||| || Sbjct 314622 TTCCTCCTCTCAATCTCAACACCAAATGAAGAGTGGAGTCTTTTTGAATGTTATAATCAT 314681 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 ||||| ||| |||| |||| ||||| || || | || || | ||| || ||| | Sbjct 314682 TGAAAG--TTCTGCCATCTTCCAATTGTTTACCTGCGTAGATGAGCCTTTGTTGTTCTGG 314739 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || || || ||||| || || ||| ||| || | | || || || | || Sbjct 314740 TGGAACTCCTTCCTTATCTTGAACCTTTCTTTTAACATTTTCAATTGAATCGTTTGATTC 314799 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || || ||||| || ||||| ||||| ||||| | ||||| Sbjct 314800 AACTTCCAATGTGATAGTTTTACCAGTGAGTGTCTTGACAAATAATTGCAT 314850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630498125952