Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq102 120 4e-22 seq21 102 1e-16 >seq102 Length=34929 Score = 120 bits (132), Expect = 4e-22 Identities = 362/553 (65%), Gaps = 7/553 (1%) Strand=Plus/Plus Query 104863 TAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGG 104922 |||||||||||| ||| | || || |||||| |||| | ||| |||| | Sbjct 32041 TAAAGAATTATTTTGGTTCATTTCTGGAAGTACAAATGCTAAAATTTTATCTGAACAAGA 32100 Query 104923 TGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTT 104982 | || | | ||| ||| ||||| || | | | ||||||||| | |||||| | Sbjct 32101 TATTCATATTTGGGATGGAAATGGATCGAGAGAATATTTAGATTCATTGGGATTTGAGAA 32160 Query 104983 TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA-TGCTGGAGCTC 105041 ||| |||| ||||| || || ||||||| |||||||||||||| || | || || Sbjct 32161 TCGTGAAGAGATGGATTTGGGTCCTGTTTATGGTTTTCAATGGAGACATTGGGGTAGTTC 32220 Query 105042 AATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTT 105100 |||| | | || |||| || ||||| | || | || ||||| | || | Sbjct 32221 -ATAT-GAAAATATGCATACAGATTATACAAATAAGGGAGTTGATCAATTGAAGAAATGT 32278 Query 105101 ATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAGTTGGAATGTG 105160 || |||||| |||| ||||| || | || | || || || | |||||||| Sbjct 32279 ATTGAAACTTTAAAGAATAATCCAACTAATAGACGTATTATATTATCTGCATGGAATGTA 32338 Query 105161 TCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACAT---T 105217 ||| | ||| | ||||||| | ||||| ||||||| || ||||||| | | Sbjct 32339 TCAGATTTACCTAATATGGCATTACCACCTTGTCATTTAATGTGTCAATTTTGGGTAGAT 32398 Query 105218 AGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGT 105277 | | ||| | | | ||| ||||||| ||||||||||||| ||| | ||||||||| Sbjct 32399 ACAGATACTAATGAATTAAGTTGTCAAATGTATCAAAGATCATGTGATATGGGATTAGGT 32458 Query 105278 GTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAATGGTGTAAT 105337 || |||| |||||||| | ||| | || || | | | || || |||||| Sbjct 32459 GTTCCATTTAATATTGCATCATATGCTTTATTAACAAGATTAATGGCACAAGTTTGTAAT 32518 Query 105338 CTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAACCATGTT 105397 ||| || || | ||||||||||| || || ||| ||||| ||| || ||| || Sbjct 32519 TTAAAACCTGGTGATTTTATTCATACATTGGGTGATACACATGTTTATAAGAATCATATT 32578 Query 105398 GACCAATTAAAAA 105410 || | || |||| Sbjct 32579 GAACCTTTGAAAA 32591 >seq21 Length=820293 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 126966 TATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTA 127025 ||||| ||| | |||||||||||| ||||||||||||||||||| | | || | || Sbjct 816779 TATCAACGTTTAAAACATATGGTTTTAGATAAAATGCATGCTAGATCTAAGGGACCTGTT 816838 Query 127026 ACAACATTACATCGTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGA 127085 | || ||| | |||||| |||||||| ||| ||||| |||||||| || Sbjct 816839 AGAATTTTAACAAGACAACCACTTGAAGGTCGTTCAAAAGAAGGTGGTTTAAGATTAGGT 816898 Query 127086 GAAATGGAAAAAGATTGTATT-TTGGTTCATGGAGCCACACAATTTTTAAATGAAAGAAT 127144 ||||||||| |||||| | |||| | |||| || | ||| ||| |||||| | Sbjct 816899 GAAATGGAACGTGATTGTTTAATTGGAT-ATGGTGCAAGTGCATTATTATTAGAAAGATT 816957 Query 127145 GTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGTACAAATTGTGGAATGATT 127199 | |||| ||||||| | | | | |||| ||| | |||||||||||||| Sbjct 816958 AATGTTATCTTCAGATGAATATAAGGTACATGTTTGTGAAGATTGTGGAATGATT 817012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658396747648640