Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 291 9e-74 seq38 277 2e-69 seq62 228 9e-55 seq231 206 3e-48 >seq9 Length=695587 Score = 291 bits (322), Expect = 9e-74 Identities = 627/910 (69%), Gaps = 32/910 (4%) Strand=Plus/Minus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATAT-ACATTCCA 18733 |||||| ||||| | || ||||| || || || ||||| | ||||| | |||| | Sbjct 333195 ATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGATATTC-A 333137 Query 18734 TAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAAT-AGTAGT 18792 | |||| ||||||||| | ||||| || |||| |||| ||| || | | | Sbjct 333136 TCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCC-AATAGAAACCAACAAT 333078 Query 18793 CTATCCGCTACAAATTTAATATATGTGTT-CATCATATC-ACAATTCATTCCTATTAATT 18850 ||||| || || | || ||||||| |||| ||| | ||| || ||||||||| || || | Sbjct 333077 CTATCAGCAACCATTTCAATATAT-TGTTGCATTA-ATCTACTATTCATTCCAATCAAAT 333020 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 ||| |||| || | | |||||| | || || | || || || | | || | Sbjct 333019 CAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAGTG 332960 Query 18911 ATACAACTCTATCTTCATTAGG------AGGGTATAGAAGATGTTTAA-ACATCAAACAT 18963 | |||| ||| | ||| || |||| | |||| || | | |||||| Sbjct 332959 AATGAACTA---CTTGTTGAGGTAATTTAGTGTATTTCA-ATGTGGAATAGAGTAAACAT 332904 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 || ||||| ||||| || || || | | ||||||||||||||| |||| ||||||| Sbjct 332903 GCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCA 332844 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 |||||||| || | ||| ||||||||||| || ||| ||| |||||| ||||| || Sbjct 332843 GGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATT 332784 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 || || || |||||| || | | |||||| || ||| | || | | || |||| Sbjct 332783 CCCTCCACACATGCAAATGCCAACAATCTTTCAGCA-AACAA--ATTCTCAGAATTAATC 332727 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 ||||||| |||||| | ||| ||||||| || |||| | ||| || || | || |||| Sbjct 332726 CATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAAT 332667 Query 19204 AGATACATACGCTCATCTGTA-TCTTTAA-CATATGCATCTATCAATAAACTGTACATTT 19261 ||| | | || ||| | ||||||| || | | || || | ||| ||||||| Sbjct 332666 AGACGATTTCTTTC-TCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTT 332609 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | | |||||||||||| || || || |||||||| || |||||||||||||||| || | Sbjct 332608 CAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTT 332549 Query 19322 GTACTTCA-CTACAAAATCTTTCGACCAA-ATTTTCATTAACTATTCCATCACTAGCTGC 19379 | |||| | | || | || ||| | ||||||||| || ||||||||||| ||||| Sbjct 332548 GAACTTGTGCCATGAATTGTT--GACATAGATTTTCATTGACAATTCCATCACTGGCTGC 332491 Query 19380 AAAAAATGCTAATACATGT-TTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438 ||| || || | || ||| || || ||||||| ||||| || | | | | | ||| | Sbjct 332490 AAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATT 332432 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 || | ||||| | | ||| || || || |||||||| || |||||| || |||| Sbjct 332431 CAGTTATATCAGTGTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTT 332372 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558 | ||||| | ||| || | | |||| || | ||||| | |||||| | || ||||| Sbjct 332371 TGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTT 332312 Query 19559 CTTTAAGAAT 19568 |||| || || Sbjct 332311 CTTTGAGGAT 332302 >seq38 Length=381539 Score = 277 bits (306), Expect = 2e-69 Identities = 593/877 (68%), Gaps = 20/877 (2%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || ||| || || ||||||||||| || |||| ||| |||| ||| || || Sbjct 295917 AAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAAT 295858 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG 47993 ||||| ||| | ||| | | ||||| ||||| | ||||| ||||| ||| | Sbjct 295857 TTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTC--TA 295800 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 ||||| | |||||||| | ||| | || |||||||| || || | |||||| ||| Sbjct 295799 TTACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATA 295740 Query 48054 GATTTCCAAAC---AGTCCT--AGCCTTTATAACAGCTCTAG--CTTTATTATCATGTTC 48106 | ||||| ||| || |||||| || |||| | |||| | || ||| Sbjct 295739 G-----CAAACCAGAGTTCTTGAGCCTTGAT-GGTTCTCTTGGCCTTTCCT-TCTCTTTC 295687 Query 48107 GTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTC 48166 ||||| |||||||| | | ||||| || || | |||| | | | || || ||| Sbjct 295686 ATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTC 295627 Query 48167 ATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGG 48226 ||| ||||| | | |||||| || |||||| || || | ||| || | ||| Sbjct 295626 ATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTT 295567 Query 48227 TATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT 48286 | ||| | | | | |||||||| |||| ||| | |||||| || || |||| || | Sbjct 295566 GACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCT 295507 Query 48287 AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACC 48346 | || | |||||| | || |||| ||||| ||||| ||||| || || | |||| Sbjct 295506 CAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACC 295447 Query 48347 TGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACAT 48406 || ||| ||| |||||||| | |||||||||||| | || ||||||| ||||| Sbjct 295446 CTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACAT 295387 Query 48407 TGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT 48466 ||| | | |||||||||| | || || || || ||| || |||| |||||| || Sbjct 295386 TGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAAT 295327 Query 48467 ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 ||| || ||| | ||| |||||||| || || || || || ||||| ||||| Sbjct 295326 ATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAG 295267 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 |||||||||||| || | || |||||| ||||| | || |||||| | ||| Sbjct 295266 GGTATCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCAT 295207 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 ||| ||| ||| || | ||| || ||||||||||| ||||||||||| ||| | | Sbjct 295206 TTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAA-CATACCAC 295148 Query 48647 TGAT-AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAG 48705 | | | || | ||| |||| ||| | || || || | | || ||||||| | Sbjct 295147 TACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTGGATACCTAAAC 295088 Query 48706 ATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||||||||| ||||| | ||| |||||||| |||| Sbjct 295087 TTACACGCATAAACATGTGTTGTGGTCTTTCGGCAAT 295051 >seq62 Length=286411 Score = 228 bits (252), Expect = 9e-55 Identities = 422/612 (69%), Gaps = 8/612 (1%) Strand=Plus/Plus Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 ||||| ||||||||| |||| ||| || || | || |||||||| || |||| Sbjct 259943 AAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCC 260002 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 ||||||||||| || || | ||| || ||||| || || ||| || || ||||| ||| Sbjct 260003 AAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAG 260062 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 || |||||||| || ||||| || | || | ||| || | | |||||||| Sbjct 260063 AAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTATTG 260122 Query 19138 TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAA 19197 |||||||||| |||||| |||||||||| |||| |||| | || || || | | Sbjct 260123 ---ATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCA 260179 Query 19198 TTAAATAGATACATACGCTCATCTGT-ATC-TTTAACATATGCATCTATCAATAAACTGT 19255 || || | | | || ||| | ||| |||| || | | || || | | ||| | Sbjct 260180 TTGAACAAACGATGTCTTTC-TCTTTGATCCTTTATCAAA-GTTTCAATGAGTGTACTAT 260237 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| | ||| |||||||| ||||| || || || ||||| |||||||| ||||||| Sbjct 260238 ACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTG 260297 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 ||| ||||| ||| |||| || | |||||||||||| || || || || | Sbjct 260298 GTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACG 260357 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | ||||| || ||||| ||| || ||||| |||| ||| | || || || || ||| Sbjct 260358 CAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCC 260417 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | | ||||||| | | ||| ||||||||| | ||||| || || ||| || | Sbjct 260418 ATTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCT 260477 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTAT 19555 | |||||||| | ||| || | |||||| | ||| |||| ||||| | | | || Sbjct 260478 TCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGAT 260537 Query 19556 TTT-CTTTAAGA 19566 ||| ||| |||| Sbjct 260538 TTTCCTTCAAGA 260549 >seq231 Length=8293 Score = 206 bits (228), Expect = 3e-48 Identities = 372/530 (70%), Gaps = 13/530 (2%) Strand=Plus/Minus Query 19044 tAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGC 19103 ||||||||| || ||| ||| |||||| ||||| || || || || |||||| || Sbjct 1394 TAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGC 1335 Query 19104 AACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGC 19163 | | |||||| || ||| | || | | || ||||||||||| |||||| | ||| Sbjct 1334 CAACAATCTTTCAGCA-AACAA--ATTCTCAGAATTAATCCATTTCAATGCCCAGTTAGC 1278 Query 19164 CTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGT 19223 ||||||| || |||| | ||| || || | || ||||||| | | || ||| | Sbjct 1277 TTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTC-TCTTT 1219 Query 19224 A-TCTTTAA-CATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281 ||||||| || | | || || | ||| |||||||| | |||||||||||| || Sbjct 1218 GGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATG 1160 Query 19282 GCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA-CTACAAAATCT 19340 || || |||||||| || |||||||||||||||| || || |||| | | || | | Sbjct 1159 GCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGT 1100 Query 19341 TTCGACCAA-ATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGT- 19398 | ||| | ||||||||| || ||||||||||| || ||||| || || | || ||| Sbjct 1099 T--GACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCAC-TGTC 1043 Query 19399 TTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAA 19458 || || ||||||| ||||| ||| | | | | | ||| ||| | ||||| | | | Sbjct 1042 TTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAGA 983 Query 19459 TCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCA 19518 || || || || |||||||| || |||||| || ||||| ||||| | ||| || | | Sbjct 982 TCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATTTTA 923 Query 19519 CGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAAT 19568 |||| || | ||||| | |||||| | || ||||||||| || || Sbjct 922 GGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTTCTTTGAGGAT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103291333760