Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9 194 2e-44 seq62 185 1e-41 seq79 136 5e-27 seq231 123 3e-23 >seq9 Length=695587 Score = 194 bits (214), Expect = 2e-44 Identities = 420/619 (68%), Gaps = 17/619 (3%) Strand=Plus/Minus Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 ||||||||| ||||| |||||| |||||||| | | ||||||||||||||| || | Sbjct 332910 TAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGA 332851 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 ||| || ||||| | ||| | ||| || | ||| || |||| |||| |||||| || Sbjct 332850 TAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAA 332791 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 |||||| || || || ||||||||| | | | | | | || || || || Sbjct 332790 GAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAAC----AA--ATTCTC 332737 Query 37352 AGAA---ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 |||| |||||||| || ||| | || || || ||| || | ||| ||||| Sbjct 332736 AGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAAT 332677 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 || | || ||| ||| ||||| ||| | || ||| ||||| || ||| Sbjct 332676 GGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACT 332617 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||||||||| |||||||||||||| || || ||||| ||||| ||||| || ||||| Sbjct 332616 ATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTC 332557 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTT-AGCTAAGTTTTCATTAACTATCCCATCAC 37587 | || |||||| | || | | | || | || |||||||| || || ||||||| Sbjct 332556 TGGTACTTGAAC-TTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCAC 332498 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT--CATTTGATAATTT 37645 | ||||||||||| || || || || || |||||| ||||| | ||| | ||| Sbjct 332497 TGGCTGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAATTG--AGTTT 332440 Query 37646 TTTCCAATCATTAATATC-TTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCA 37704 || ||| ||| | ||||| | ||| | |||||| || || || ||||| || |||| Sbjct 332439 TTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCA 332381 Query 37705 ATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 || ||| ||||| ||| || | | || || | |||||| | ||||| | || Sbjct 332380 TTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGAT 332321 Query 37765 CAGATGATTCTTTAAGAAT 37783 || |||||| || || Sbjct 332320 GAGGATTTTCTTTGAGGAT 332302 >seq62 Length=286411 Score = 185 bits (204), Expect = 1e-41 Identities = 563/855 (66%), Gaps = 30/855 (4%) Strand=Plus/Plus Query 36890 ATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCAT 36949 |||||| |||||| |||| || || |||||||| || | || ||| | | ||| Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCACTAACAGAAATAATGTTCAT 259716 Query 36950 AAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTT--CAGAAGC 37007 |||| |||||||| | | ||| || || || ||| | | | || ||| Sbjct 259717 CCAATCGAATGGATTTGGAGAATTGTAAATCTTAT--CATAACCAAGGGATACCAAAAGT 259774 Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 ||||| ||||| | ||| ||||||| ||||| | |||| |||||||| | | | Sbjct 259775 CTATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAAATCT 259834 Query 37068 ACTGGAATTGCATCTTGAAGAAAT--AGT--TTTTCTATTATTACAGCATCTTTAACTAT 37123 ||||| | | ||| | |||| | | ||||| ||| ||||| || ||||| Sbjct 259835 ACTGGCA----AACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTAG 259890 Query 37124 ATTAACAATAACTTCTT----CAGTTGGGGGATATTTTAAATATTTAA-ACAATAAACAT 37178 || ||||| || || || || | || ||| | || | |||||||| Sbjct 259891 TGAGTGAACAACTTGTTGCGGCAATTTGGTAAACTTC--AATGTGGAATATAATAAACAG 259948 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||||||| ||||| |||||||| | || |||||||| || || | || || Sbjct 259949 GCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCA 260008 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298 ||||| | ||| | ||| || | |||||| || | ||||| ||||| ||||||||| Sbjct 260009 GGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATA 260068 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358 |||||||| ||||| || | | |||| | || | || | | || | ||| Sbjct 260069 CCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAA---TAAATTCTCATTATTGATC 260125 Query 37359 CAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAG 37418 ||||| | | |||| |||||| || ||| || || || ||||| || || || Sbjct 260126 CATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAAC 260185 Query 37419 AGA--AAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTT 37476 | | | || ||| |||| ||| |||| |||| ||||| ||| ||||||||||| Sbjct 260186 AAACGATGTCTTTCTCTTTG--ATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTT 260243 Query 37477 CAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATT 37536 ||| || |||||||||||||| || || ||||| || ||||| || ||||| | || || Sbjct 260244 CAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTT 260303 Query 37537 GAACATCGTTAAAAAACCTCTTAGC-TAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 | || || | ||| | || || || |||||||| || || || || || ||| Sbjct 260304 GTACCTCAGCCATAAA-TTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCA 260362 Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 |||||||| | |||| || ||||| ||| ||| | || || | |||| | Sbjct 260363 AAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCCATTGT 260422 Query 37656 TTAATATC-TTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTT 37714 ||||||| | ||| | ||||||||| ||| | ||||| || ||||| || || Sbjct 260423 GTAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTT 260481 Query 37715 ATACATCGTCCAAAT 37729 |||||| |||||| Sbjct 260482 ATACATTTCCCAAAT 260496 >seq79 Length=326815 Score = 136 bits (150), Expect = 5e-27 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 78232 ATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATA 78291 |||||||||| ||||||||||||||||| || |||| | || ||||| | |||| | Sbjct 192786 ATGTTATTGGTATTGATGAAGGTCAATTCTTCCCTGATTTGGTTGAATTCTGTGAAGCTG 192845 Query 78292 TGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAA 78351 || ||| ||| |||||||| |||||| || || |||| ||| | ||||||||| Sbjct 192846 CTGCTAATGGAGGTAAAATTGTAATTGTTAGTGCTTTGGATGGTACTTTCCAAAGAAAAC 192905 Query 78352 CATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTA 78411 |||||| ||| |||| || ||||| | |||||| || | ||| | || ||| Sbjct 192906 AATTTGGAAATGTTCTTTCATTGGTTCCAATGGCTGAAAGTGTTGTGAAACTTAAGGCTG 192965 Query 78412 TATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTA-AA 78470 | |||| | ||| ||| |||||||| || | ||| | | ||| || || | || Sbjct 192966 TTTGTATGGTTTGTGGTAAAGATGCTGCCTTCTCTAAACGTATCACTGATGA-ACAACAA 193024 Query 78471 ATTGAACTAATTGGTGGAGAGGATAAATATAGTTCTGTTTGTAGAAAATGTTAT 78524 | |||| | ||||||||| ||||| |||| | | ||||||||| |||||| Sbjct 193025 ACTGAAGTTATTGGTGGATCTGATAAGTATATTGCCACTTGTAGAAAGTGTTAT 193078 >seq231 Length=8293 Score = 123 bits (136), Expect = 3e-23 Identities = 234/337 (69%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 37451 AGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACC 37510 ||| ||||| || |||||||||||||| |||||||||||||| || || ||||| || Sbjct 1205 AGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCC 1146 Query 37511 ATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT-AGCTAAGTTTT 37569 ||| ||||| || ||||| | || |||||| | || | | | || | || |||| Sbjct 1145 ATAGAAACATCTTGCTTCTGGTACTTGAAC-TTGTGCCATGAATTGTTGACATAGATTTT 1087 Query 37570 CATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT 37629 |||| || || |||||||| || |||||||| || || || || || |||||| || Sbjct 1086 CATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTT 1027 Query 37630 CAT--CATTTGATAATTTTTTCCAATCATTAATATC-TTTTGATAAATCAACTTCATCAA 37686 ||| | ||| | ||||| ||| ||| | ||||| | ||| | |||||| || || | Sbjct 1026 CATTAGAGTTG--AGTTTTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCA 970 Query 37687 CGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTG 37746 | ||||| || |||| || ||| ||||| ||| || | | || || | || Sbjct 969 CTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTG 910 Query 37747 GAAATATTACAAATCTATCAGATGATTCTTTAAGAAT 37783 |||| | ||||| | || || |||||| || || Sbjct 909 GAAAGAGAACAAAACGATGAGGATTTTCTTTGAGGAT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592310995295360