Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq25 113 1e-19 seq102 86.0 1e-11 >seq25 Length=747259 Score = 113 bits (124), Expect = 1e-19 Identities = 256/378 (68%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 |||| | |||| |||||||||| | | || |||||||| ||| | || | || Sbjct 403019 GGTGTTCAAGGTTGTGGTAAAACAGCTGTATTGGAAGGATTAGCTCAAAGAATTGTAAAA 403078 Query 150464 GGTGATGTTCCAGATTCTATGAAAGATGTTGAAATTCTTT-CTTTGAATATGGGTGCATT 150522 ||||| || || ||||| || || || || ||| | | ||| || ||| | | Sbjct 403079 GGTGAAGTGCCTGATTCAATTAAGAATAA-GAGATTAATAGCATTGGATTTGGCATCCAT 403137 Query 150523 TACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTTGCTACAA 150580 | | |||||| ||| | | | |||||||| |||||||||||| | ||||| ||| | Sbjct 403138 CATTTCTGGTAGTAAATTTAGAGGTGAATTTGAAGAACGTGTACAGGCAATT--CTAAGA 403195 Query 150581 GAACTAAAAGAAC----GCGATGATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 || | || |||| | || || ||||||| ||||| |||||||| || | ||| | Sbjct 403196 GATGTTAAGGAACATCAGGGA-GAAATTATTCTATTCATTGATGAAATTCACATGATTGT 403254 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 |||||||| | || |||||| | |||||| |||||||||||||| | | Sbjct 403255 AAGTGCTGGT---AGTGCTCAAGGTTCTCTTGATATGGCAAATATGTTAAAACCATATTT 403311 Query 150697 ATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACAT 150756 | | | || ||| ||| | || ||||| ||||| | ||||||||| | | | || Sbjct 403312 AGCAAGAGGAGAACTTCATTGTATTGGTGCTACAACTTTGGATGAATATAGATTATATAT 403371 Query 150757 TGAAAAAGATGCAGCACT 150774 |||||||||| ||||| Sbjct 403372 TGAAAAAGATAAGGCACT 403389 >seq102 Length=34929 Score = 86.0 bits (94), Expect = 1e-11 Identities = 293/452 (65%), Gaps = 11/452 (2%) Strand=Plus/Plus Query 133884 TTGAAGTACT-TATTGATGGATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACT 133942 |||||| | | |||||| || || |||||||| | | ||||| ||| || || Sbjct 32267 TTGAAGAAATGTATTGAAACTTTAAAGAATAATCCAACTAATAGACGTATTATATTATCT 32326 Query 133943 GCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAA 134002 ||||||||||| || || ||| ||| | || ||||| ||||||| | ||||| Sbjct 32327 GCATGGAATGTATCAGATTTACCTAATATGGCATTACCACCTTGTCATTTAATGTGTCAA 32386 Query 134003 TTCTTCGTAAAT---GACGGTAAGTTATCATGTATTCTA---TATCAACGTAGCTGTGAT 134056 || | ||| || || ||| || | || || | |||||| | |||||| Sbjct 32387 TTTTGGGTAGATACAGATACTAATGAATTAAGTTGTCAAATGTATCAAAGATCATGTGAT 32446 Query 134057 CTATTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCA 134116 | ||||| || ||||| || ||||| |||||| | ||| |||| | | ||| Sbjct 32447 ATGGGATTAGGTGTTCCATTTAATATTGCATCATATGCTTTATTAACAAGATTAATGGCA 32506 Query 134117 CAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGT--ATGGATGGGTGGAGATGTTCACATTT 134174 ||||||||| ||| || |||||| ||| | || || | || ||| || ||| Sbjct 32507 CAAGTTTGTAATTTAAAACCTGGTGATTTTATTCATACATTG--GGTGATACACATGTTT 32564 Query 134175 ATAAAAATCACGTAGAAGCAGTTCAGGAACAACTTTCACGTGAACCTAAAGAATTACCAA 134234 |||| ||||| | ||| | | | ||||| || | | || || ||| | || || Sbjct 32565 ATAAGAATCATATTGAACCTTTGAAAAAACAAATTGAAAGAGATCCAAAACATTTCCCTC 32624 Query 134235 CTCTTTGGATTGATACTAGTATTACTGATATTAAAGATTTCACAATGGAATCTTTTAAAT 134294 | | | ||||| || |||||| ||||| | ||||| | | | ||| ||| | | Sbjct 32625 TTTTATTACTTGATCCTTCCATTACTAATATTGATGATTTTAAATTTGAACATTTAACTT 32684 Query 134295 TGGAAAATTATAATCCAGATGCAACCATCAAA 134326 | |||||||| | ||| |||| || || ||| Sbjct 32685 TACAAAATTATGAACCACATGCTACTATTAAA 32716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147578872454432