Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq38 230 1e-55 >seq38 Length=381539 Score = 230 bits (254), Expect = 1e-55 Identities = 291/395 (74%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 25964 AATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCA 26023 ||||||||||| ||||| |||||||| || |||||||||||| | | ||| || || ||| Sbjct 295550 AATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCA 295491 Query 26024 AAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCA 26083 ||||| || |||||||| ||||| ||||| || ||||| ||| ||||| || || ||| Sbjct 295490 AAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTTCTCTTACCACCA 295431 Query 26084 CCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTT 26143 |||||||| || ||||| ||||| |||||||||||| |||||||||||| ||| ||| || Sbjct 295430 CCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGGAATTAAACCATTT 295371 Query 26144 GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGA-AT 26202 || ||||||||| | ||| | ||||| | | |||||||| |||| | ||| | Sbjct 295370 GATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATTGTGAAC-TGACAA 295312 Query 26203 ACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAA-TCTGAAACTGTATCGAAAATTC 26261 ||| || |||||||| | || |||||| |||||| ||| || ||||| |||| | Sbjct 295311 ACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCT-TAAGGGTATCATAAATAC 295253 Query 26262 CTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTG 26321 | | ||| |||| | ||||| | | ||||||||| | ||| | | | | Sbjct 295252 CATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTGTGGAATTGGAG 295193 Query 26322 TTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 | || | ||| || ||||| || | |||||| || Sbjct 295192 TACCAGCATTGAACAATGTTGGAGAGGCATGAATA 295158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037582202800