Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq19 116 4e-21 >seq19 Length=467654 Score = 116 bits (128), Expect = 4e-21 Identities = 503/781 (64%), Gaps = 22/781 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||| || ||||| | || ||||| ||||| || ||||||||| || ||||| ||| Sbjct 348007 ACACAGATTGGACCAATACCTGGACCACCACCACCGTGTGGAATAGCAAAGGTCTTGTGT 348066 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || || ||||| || || |||||| | || || | ||| | || || ||| Sbjct 348067 AAGTTAAGGTGACAAACGTCAGCACCAATCTTACCAGGAGAAGTGAGAGCAACTTGAGCA 348126 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| | || || ||| ||||| || |||| | ||||| || Sbjct 348127 TTCATGTTAGCACCATCCAAGTAAACTTGAGCACCAGCTTCGTGAATCAAGTTACAGATT 348186 Query 138363 TGTCTGATGTTTGT-TTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | | ||| | | | |||| | ||||||||||| |||||||| |||||||| | | Sbjct 348187 TCT-TGAACTCTTTCTTCATAGACACCATGAGTGGATGGATAAGTAATCATGA-----GG 348240 Query 138422 GAGTTCAAATGTAT--TCATGAT-TGCTTTCTT---CTCTAGATCTTTGATGTCTATGTT 138475 || ||| ||| | ||| | | |||| || | ||||| | || | ||| Sbjct 348241 GA-AGCAACCTTATCCTTATGTTGAGAAATCTTGAGCTTCAAATCTTCAACATCAACGTT 348299 Query 138476 GCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 ||| | |||||| | ||| | ||||| |||| || ||| || || ||| || Sbjct 348300 ACCAAGCTTATCACATTCAACAACGACAACCTTCAAACCACACATAACAGCTGAAGCTGG 348359 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCC 138595 ||||| || || || || ||| |||| ||| | || ||| | | | | || | Sbjct 348360 GTTAGTACCGTGAGCAGATGATGGAATCAAACAGATATCTCTGTGACCTTGACCAATGCT 348419 Query 138596 TTGATGATA-TGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAG 138654 || ||| | ||| || | |||| || ||||| ||||| ||||| || || || | Sbjct 348420 TTCCAAATACTTCTT-AATAACCAACAAACCAGCATATTCACCTTGTGAACCAGCATTTG 348478 Query 138655 GTTGTAATGATATAG-AATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATCT 138713 |||| ||||| | || ||||||||| || || | | | ||||||| || || || || Sbjct 348479 GTTGCAATGA-ACAGTTATCAAAACCAGTAATCTTAGACAACCATTGCTTCAAATCTTCA 348537 Query 138714 ATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTG--GCAA 138771 || || | ||| || | || | | || | | | || || | ||| ||| Sbjct 348538 ATCATTCTCAAATATCCTTGAGCTTGGTTGAGTGGAGCAAGAGGGTGAA--TTGATCCAA 348595 Query 138772 ATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTAC 138831 ||||| ||| | || || ||| | || | | ||| | ||||| |||||| || Sbjct 348596 ATTCTGGCCAAGTGACTGGAGTCATAACAGCAACAGAATTCAACTTCATGGTGCAAGAAC 348655 Query 138832 CAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGATATATC 138891 | | ||| | |||||| | | ||| |||| |||| || | | ||||||| Sbjct 348656 CCAATGGGATCATACCGTGACAGAGAGAGTAATCCTTAGCTTCCAATTTCTTAATATATC 348715 Query 138892 TCATCATGTCAGTTTCACTGTGATACTTATTGAATACTTCCTGAGTCAACCATGGTTTAG 138951 | | ||| || |||| |||||||||| ||||| |||||||| ||||| ||| Sbjct 348716 TGAGCATAGCATGTTCAGTGTGATACTTGTTGAAAGTGGAGTGAGTCAAATATGGTGTAG 348775 Query 138952 T 138952 | Sbjct 348776 T 348776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 200/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 139841 AGAATTATATGCTAACAGC-ATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATG 139899 || |||||| | |||||| || || || || |||||||| |||||||| || || || | Sbjct 349686 AGCATTATAA-CAAACAGCCATAGCTTCAGCAGCTGCAGTAGCTTCATCCAAAAGTGAAG 349744 Query 139900 CGTTTGCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTT 139959 | || || ||||| | || || | || | || | ||||| ||||| || | | || Sbjct 349745 CATTAGCGATTGGAAGACCAGTCAAATCAGAAATCATTGTTTGATAATTCAAGAGTGATT 349804 Query 139960 CCAATCTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGAT 140019 | | ||| || ||||| || ||||||||||| ||||| || | |||||||| | |||| Sbjct 349805 CAAGTCTACCTTGAGAGATTTCAGCTTGATATGGAGTATATGGAGTGTACCAGCCTGGAT 349864 Query 140020 TCTCAAGAACGTTTCGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTA 140079 | | | || ||| || | || || || | || | |||| || |||||||| | Sbjct 349865 TTTGGAAAATGTTACGAAGAATAACATTAGGAATCTTGTTATCATAATAACCTTGACCAA 349924 Query 140080 TAAGACTAGGTTTT-ACTTTGTTTGCTTTTGCTATATTTTTTAACTCTGCCAA 140131 | | | | |||| |||| ||| ||| || ||| | ||| || ||||| Sbjct 349925 TCA-ATGATTTTTTGACTTGGTTGAGTTTAGCATGATTATATAATTCAGCCAA 349976 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 139268 TGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCA 139327 || ||||||||| | ||||| | | |||||| || | || ||||| || || || Sbjct 349116 TGGACCATGATAAACAGCATACATAGAGGCCATATTAGCCAAGAGAGCTTGAGCAGTACA 349175 Query 139328 GATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCT 139387 ||||||||||| || || || | |||||| || || ||||||||||| || || | | Sbjct 349176 AATGTTACTGGTGGCCTTATCACGTCTAATGTGTTGTTCTCTAGTTTGGAGAGCCATACG 349235 Query 139388 GTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCT 139447 |||| || |||| ||| || ||| | |||||| || || || |||| Sbjct 349236 AAGAGCAGTCTTACCTTGAGCATCCTTAGAGATACCAATAATTCTACCTGGAATAATTCT 349295 Query 139448 CTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAAT 139507 |||||| | || | | ||||| ||||| ||||| || || || | |||| Sbjct 349296 CTTATAATCATCCTTAACAGACAAGAAACCAGCACTTGGACCACCATAACCGAGTGGAAC 349355 Query 139508 ACCAAACCTTTGCATACTACC 139528 |||||| ||||| |||||| Sbjct 349356 ACCAAATCTTTGAGCACTACC 349376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992725815680