Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq66 181 1e-40 seq8 154 2e-32 >seq66 Length=243952 Score = 181 bits (200), Expect = 1e-40 Identities = 365/536 (68%), Gaps = 8/536 (1%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||||| | |||| | || | ||||||||||||||| ||||||||||| | Sbjct 115999 CCAGTGGCAACACAGTAATCGGCTGGCTTTTCTTGTTGAAGCATCAACCACATAGCTTTA 115940 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 |||||||| ||||||| ||||| || | ||||| | ||| || | ||| ||||| Sbjct 115939 ACATAATCCTTGGCATGCCCCCAATCTCTTTCAGCATCCAAATTACCCAAATACAAACAA 115880 Query 47908 TCTTGCTTACCTTCAGA-GATTGCTTTTAAT-GCTCTTGTAATCTTACGAGTTACAAAAG 47965 |||||| || ||| || | | || || | || ||||| | |||||||| | Sbjct 115879 TCTTGCAATCCA--AGATGAATACGAGCAACAGCCATAGTGATCTTTCTGGTTACAAATG 115822 Query 47966 TTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGT 48025 || || | ||| | ||| ||||| |||||||| || | | ||| |||| || Sbjct 115821 TTGGTCCTCTTCTAATACTTTCGTGATTGAAAAGAATTCCGTTCAAAGCAAACATGTTGT 115762 Query 48026 ATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAG 48085 | | ||| | ||| || | || |||||||| | ||| | |||||| | ||||||||| Sbjct 115761 AAGCTTCTCTATAATTAATGACAATCCAGTAACTATACAACTTTGCACAAGCATAAGGAG 115702 Query 48086 AACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTT 48145 |||| ||||||||||| ||||| ||| | || || | ||||| ||| |||||| | || Sbjct 115701 AACGAGGATAGAAAGGAGTGGTTTCTTTTTGGGGGATTTCTTGAACCAAACCATACAATT 115642 Query 48146 CACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCA--TCTCAAGCAAACGGACTGC 48203 || || |||||||| | | | | | ||| | | ||||| ||| | || Sbjct 115641 CAGAAGTACTAGCTTGATAAAATCTTGTCTTCTTTTCTAATCCACAAGC--ACGAATAGC 115584 Query 48204 CTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAA 48263 || | || ||||| || || | ||||| | | |||| || || ||||||||||| Sbjct 115583 TTCCAACATTCTCAATGTACCAACAGCATCAACATTAGCAGTGTATTCAGGCATCTCAAA 115524 Query 48264 CGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCT 48319 || || |||||| || || || ||||||||||| ||||| || | || || Sbjct 115523 GCTGACTTTAACATGAGATTGAGCACCGAGATTATAAATTTCATCAGGCTTAATCT 115468 Score = 127 bits (140), Expect = 3e-24 Identities = 336/504 (67%), Gaps = 18/504 (4%) Strand=Plus/Minus Query 47818 TCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGA 47877 |||||||| ||||| |||||||||||||| || ||||| | || || ||||| || | Sbjct 55788 TCTTGTTGGAGCATCAACCACATAGCCTCAACGTAATCCTTTGCGTGGCCCCAATCTCTT 55729 Query 47878 AGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGA-GATTGCTTT-TA 47935 ||||| | ||| || | ||| || || ||||| |||| ||| || | | || Sbjct 55728 TCAGCATCCAAATTACCCAAATACAAGCACTCTTGAAGACCT--AGATGAATACGAGCTA 55671 Query 47936 ATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGA--TTCATGATT 47993 ||| |||| || || | |||||||| ||| ||| | | ||| | ||||||||| Sbjct 55670 CTGCCATTGTGATTTTTCTTGTTACAAAGGTTGGACCTCTAC--GGATACTTTCATGATT 55613 Query 47994 AAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCA 48053 |||||||||||| | |||| |||| || | ||| | |||||| | || ||||| Sbjct 55612 GAAAAGAATACCATTCAAGGCGAACATGTTATAAGCTTCTCTATAGTTAATAACAATCCA 55553 Query 48054 GTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGT 48113 ||| | || | || || | |||||||||| || ||||| || || || || ||| | Sbjct 55552 GTAACTGTACAACTTAGCGCAAGCATAAGGAGATCGAGGATAAAATGGAGTAGTTTCTTT 55493 Query 48114 CTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAAC 48173 || ||| | ||||| ||| ||||| | | ||| || |||||| | |||| || Sbjct 55492 TTGAGGAATTTCTTGTACCAAGCCATACA--ACTCTGATG--TGCTTGCTTGATA-AAAT 55438 Query 48174 CCTATCTTCCATCTCAAGCAA-----ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATG 48228 | | ||||| | ||| | | |||| ||| ||||| | || | ||| || || Sbjct 55437 CTTGTCTTCGTTTCCAAACCACATGCTCGGATTGCTTCAAGAAATCGTAAGGTACCAATA 55378 Query 48229 GCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCC 48288 |||| | | || || || ||||| ||||| | || |||||| || || Sbjct 55377 CCATCAACATTTGCTGTGTATTCAGGCATTTCAAAGCTTATTTTAACATGAGATTGAGCT 55318 Query 48289 CCAAGATTATAAATCTCATCTGGT 48312 || || || || || ||||| ||| Sbjct 55317 CCCAGGTTGTATATTTCATCAGGT 55294 >seq8 Length=938756 Score = 154 bits (170), Expect = 2e-32 Identities = 265/381 (70%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||||| | | |||| | || | ||||||||| ||||| |||||||| || || Sbjct 717325 CCAGTGGCAACACAATAATCGGCTGGCTTTTCTTGTTGGAGCATCAACCACATGGCTTCA 717384 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 ||||| || | ||||||||||| || | ||||| | ||| || | ||| || || Sbjct 717385 ACATAGTCCTTAGCATGTCCCCAATCTCTTTCAGCATCCAAATTACCCAAATACAAGCAA 717444 Query 47908 TCTTGCTTACCTTCAGA-GATTGCTTTTAAT-GCTCTTGTAATCTTACGAGTTACAAAAG 47965 |||||| || ||| || | | || || | |||||||| | || ||||| | Sbjct 717445 TCTTGCAATCCG--AGATGAATACGAGCAACAGCCATAGTAATCTTTCTTGTAACAAAGG 717502 Query 47966 TTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGT 48025 || |||||| | | ||||||||| |||||||| || | | ||| |||| || Sbjct 717503 TTGGACCACGACGAATACTTTCATGATTGAAAAGAATTCCGTTCAAAGCAAACATATTGT 717562 Query 48026 ATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAG 48085 | | ||| | |||||| | || ||||| || | || | || || | |||| |||| Sbjct 717563 AAGCTTCTCTATAGTTGATAACAATCCAATAACTGTACAACTTGGCGCAAGCATATGGAG 717622 Query 48086 AACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTT 48145 ||||||||||||| || ||||| ||| | |||||| | ||||| || |||||| | || Sbjct 717623 AACGTGGATAGAATGGAGTGGTTTCTTTTTGTGGAATTTCTTGAACTAAACCATACAATT 717682 Query 48146 CACTGGTGGATGCTTGATAGA 48166 |||| || |||||||||| Sbjct 717683 CACTAGTACTAGCTTGATAGA 717703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665487878154880