Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq38 165 1e-35 seq62 145 9e-30 seq9 107 2e-18 seq8 102 1e-16 seq66 95.1 1e-14 >seq38 Length=381539 Score = 165 bits (182), Expect = 1e-35 Identities = 613/952 (64%), Gaps = 9/952 (1%) Strand=Plus/Plus Query 75299 GGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATG 75358 |||||||| ||||| || | ||||| | |||||||||||||| |||| || || ||| Sbjct 295150 GGTATGTTTATTCATGCCTCTCCAACATTGTTCAATGCTGGTACTCCAATTCCACAAATG 295209 Query 75359 TCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTT 75418 ||| ||||| | | | ||||| || || || | ||||| |||| || ||| Sbjct 295210 AGTTCTTGTTTCCTCGTTTCTATGAAGGATGATTCCATTCATGGTATTTATGATACCCTT 295269 Query 75419 ACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTG 75478 | | ||||| | || || |||| ||||| |||||||| || | || || | Sbjct 295270 AAGACTTGTGCCCTTATTTCCAAGTCTGCTGGTGGTATTGGTTTGTCAGTTCACAATATT 295329 Query 75479 AGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATG 75538 ||||| | ||| ||| | || ||||| || |||| ||||| | ||||||||| Sbjct 295330 AGAGCTTCTGGATCATACATTAGAGGTACAAACGGAACATCAAATGGTTTAATTCCAATG 295389 Query 75539 CTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGG 75595 | | || || || | ||| || | ||||| |||||| || || | ||||| Sbjct 295390 TTGAGAGTTTTCAATGACACTGCCAGATATGTCGATCAAGGTGGTGGTAAGAGAAAGGGT 295449 Query 75596 TCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGA 75655 || | || | || |||||||| ||||| | || || | || || | || || || Sbjct 295450 GCCTTTGCCATTTATTTGGAACCTTGGCACTCTGACATTTTTGACTTTTTGGATTTGAGA 295509 Query 75656 CTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCC 75714 || || ||| | ||||| || | | ||||||| | || | | ||| | Sbjct 295510 AAGAATCACGGTAAGGAAGA-AATCAGAGCTAGAGATTTATTCTTGGGTTTATGGGTCAA 295568 Query 75715 AGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAA 75774 || || |||||| | || ||| |||| | || ||||||| || ||||||||| | | Sbjct 295569 CGATCTCTTCATGCAACGTGTTAAGGATGATGCCGAATGGTCACTCTTCTGTCCAAATGA 295628 Query 75775 GGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATG- 75833 || | |||||| | || | |||||| || || | | || || || |||| Sbjct 295629 AGCTCAAGGTCTTGCTGATGTTTGGGGTGAAGAATTCAATCAATTATATACCAAATATGA 295688 Query 75834 AAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGC-CGATGTTTGGAAGGCTATTCTC 75892 ||||| ||| || ||||| | || | || | | || | ||| |||||| | Sbjct 295689 AAGAGAAGGAAAG-GCCAA-GAGAACCATCAAGGCTCAAGAACTCTGGTTTGCTATTATT 295746 Query 75893 AAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAG 75952 || | || | || ||||| ||||| ||| | ||||||||| ||||||| | || Sbjct 295747 GAAGCCCAAATTGAAACTGGTGTCCCATACATGTTGTACAAGGATTCTTGTAATAGAAAA 295806 Query 75953 AGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAG 76012 || ||| | || | || || |||||| || || | || || |||||| | || Sbjct 295807 TCCAATCAACAAAACCTTGGTACCATCAAGTCTTCTAACTTGTGTACTGAAATTATTGAA 295866 Query 76013 TACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTAT 76072 | || | | ||||| ||||| || || | || || || |||||||||||| Sbjct 295867 TTTACTGCTCCTGATGAAGTTGCTGTATGTAACCTTGCCAGTATTGCTCTTCCAAAGTAT 295926 Query 76073 GTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTT 76132 ||||||||||| |||| || | |||| | |||| | | ||| | ||||||| Sbjct 295927 GTCAATGAAGAAACTCAAACCTATGATCACCAAAAGTTATACGAAGTTGTCAAGATTGCC 295986 Query 76133 ACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG 76192 || | ||| | || | ||||| | |||| ||| || || || || ||| Sbjct 295987 ACTTACAATTTGAATAAGATTATTGATAAGAATTATTACCCAGTCGAAGAAGCCAAGAAG 296046 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 ||| | |||||||||| |||||| | |||||||||||| | || |||| Sbjct 296047 AGTAACTTTAGACACAGACCAATTGGTCTCGGTGTTCAAGGTTTGGCCGATG 296098 Score = 113 bits (124), Expect = 5e-20 Identities = 294/441 (67%), Gaps = 18/441 (4%) Strand=Plus/Plus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 |||||||| || | |||||||||||||| || |||||| ||||||||||| || ||| Sbjct 296377 AACAGTCTCTTAGTTGCACCAATGCCAACTGCTTCCACCAGTCAAATCTTGGGCAACAAT 296436 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTT 76615 ||||| || |||||||| ||| ||||| | || ||| | | ||||| | | Sbjct 296437 GAATGTTTCGAACCATATACATCAAACGTTTATACTAGACGTGTTTTGAGTGGTGAATAT 296496 Query 76616 ---GTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGG--TCCA 76670 |||||| |||| || || || ||| | | ||||||| | ||| |||| Sbjct 296497 CCAGTCATT---AACAGACATCTTGTTGCTGATTTGATCAAGATTGACATGTGGAATCCA 296553 Query 76671 AGGA-TATGAAGGATCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATAT 76728 | | | | || | | | |||| | | | |||||||| ||||||||| || ||| Sbjct 296554 ACTATTGTTAACCAAATTATTGGTAATA----GAGGTTCCATCCAAAATATCCAAGGTAT 296609 Query 76729 CCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATG--TC 76786 ||| |||||||| ||| | | ||| || || |||||||| ||| ||||| | | Sbjct 296610 CCCTGATGATATTAAGGAATTGTACAAGACTGTTTGGGAAATTAAG--CAAAGAAGCTTG 296667 Query 76787 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC 76846 | || | ||| || | || |||||||||||| |||| | |||| | ||| Sbjct 296668 TTGGATCTTGCCATTGAAAGATCTCCATTCATTGATCAATCTCAATCTTTGAACGTTTTC 296727 Query 76847 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGG 76906 || || |||| | | |||||| | ||||||||| | || || ||| ||||| Sbjct 296728 ATTTCAATTCCATCAGTTTCCAAGATGAGTTCTATGCACTTTTATGCTTGGTCTAAGGGG 296787 Query 76907 CTCAAAACCGGAATGTACTAT 76927 | || || || ||||||||| Sbjct 296788 TTGAAGACTGGTATGTACTAT 296808 >seq62 Length=286411 Score = 145 bits (160), Expect = 9e-30 Identities = 383/577 (66%), Gaps = 11/577 (2%) Strand=Plus/Minus Query 64657 TTCCCCCTGAAGTATCCACAACTCTGGGAACTCTATAAAAAGGCTCAAATGAGCAAT-TG 64715 ||||| || | |||||| | | |||||| | ||||| ||||| || | | | || Sbjct 260517 TTCCCTCTCGAATATCCAAAGATTTGGGAAATGTATAAGAAGGC-CATGGCATCCTTCTG 260459 Query 64716 GACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGAAAA 64775 |||||| |||||||||||| | || ||| || | |||| ||| ||| ||| Sbjct 260458 GACTGCTGAAGAAGTTGATCTTCACACTGATATTACACAATGGACCACCTTGACACCAAA 260399 Query 64776 TGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTT 64835 ||| | | || || ||| | | || |||||||||| |||||| || ||||| Sbjct 260398 CGAACAACACTTTATCAAGAGTGTTTTAGCTTTCTTTGCTGCGTCCGACGGTATTGTCAA 260339 Query 64836 TGAGAATATCAAT-AACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCT 64894 ||| ||| | |||||||| || ||| || || ||| |||||| | | |||| Sbjct 260338 TGAAAATTTGTGCCAACAATTTAT-GGCTGAGGTACAAATACCAGAAGCGAGATGTTTCT 260280 Query 64895 ACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGA 64952 ||| | ||| ||| || ||||| | |||| |||| ||| | | | ||||| Sbjct 260279 ACGGTTTCCAAATTGCTAT--TGAAAATATCCATGCTGAAATGTATAGTACACTCATTGA 260222 Query 64953 CAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACC 65012 | | || |||||| | |||| | | || || | ||||| | ||||| || Sbjct 260221 AACTTTGATAAAGGATCAAAGAGAAAGACATCGTTTGTTCAATGCCATTGATACTGTTCC 260162 Query 65013 ATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTT 65072 || | | | |||||||| ||||| ||||||||| | | | || | | || Sbjct 260161 ATCTGTACAAAAGAAGGCACGTTGGGCTATGAAATGGATCAATAATGAGAAT---TTATT 260105 Query 65073 CGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTG 65132 ||||| || | || || ||||| ||||| || ||||| |||||||| || || ||||| Sbjct 260104 TGCCGAACGTTTATTGGCCTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTTTCTG 260045 Query 65133 CGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACT 65192 | |||| |||||||||||| || ||||||||||| || | ||||| |||||| | Sbjct 260044 TTCCATTTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATGAATT 259985 Query 65193 TATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || ||||| ||||| || | ||| || |||||| Sbjct 259984 AATCTCCCGTGATGAAGGATTACACACTGATTTTGCC 259948 >seq9 Length=695587 Score = 107 bits (118), Expect = 2e-18 Identities = 368/563 (65%), Gaps = 17/563 (3%) Strand=Plus/Plus Query 64655 TCTTCCCCCTGAAGTATCCACAACTCTGGGAACTCTATAAAAAGGCTCAAATGAG--CAA 64712 |||| || || | ||||| || | |||||| | || |||||| | |||| || Sbjct 332333 TCTTTCCACTTCATTATCCTAAAATGTGGGAAATGTACAAAAAGAC---AATGGCTTCAT 332389 Query 64713 T-TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATG 64771 | ||||| | ||| || |||||| | || ||| | || ||| | | || ||| Sbjct 332390 TCTGGACAGTGGAGGAGGTTGATCTTCACACTGATATAACTGAATGGGAAAAACTCAATT 332449 Query 64772 AAAATGAAAAGAAATTCATAAAGTACA-TCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 |||||| | | ||||| ||| ||| | ||||| |||||||| | ||||||||| Sbjct 332450 CTAATGAACAACATTTCATCAAG-ACAGTGCTGGCCTTCTTTGCAGCCAGTGATGGAATT 332508 Query 64831 GTTTTTGAGAATATCAAT-AACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||| ||| | | ||||||| | | |||| || || ||||| | | Sbjct 332509 GTCAATGAAAATCTATGTCAACAATTCATGGCAC-AAGTTCAAGTACCAGAAGCAAGATG 332567 Query 64890 ATTCTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTG 64947 ||||| | || |||| |||||| ||||| |||||| |||| ||| | | Sbjct 332568 TTTCTATGGATTTCAAATTGCCAT--TGAAAATATTCATGCTGAAATGTATAGTACTCTC 332625 Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||| | ||||| || | |||| || | ||||| | ||||| | || Sbjct 332626 ATTGAAACTCTGATTAAAGACCAAAGAGAAAGAAATCGTCTATTTCATGCCATTGATACA 332685 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 ||||||| || | ||||| || || |||||| |||||||| || | | || | Sbjct 332686 GTACCATCAGTTCAAAAGAAAGCTAACTGGGCATTGAAATGGATTAATTCTGAGAAT--- 332742 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 | || || || | | || || ||||| ||||||||||| || |||||||| || Sbjct 332743 TTGTTTGCTGAAAGATTGTTGGCATTTGCATGTGTGGAGGGAATTTTCTTCTCTGGAAGT 332802 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || || | |||| ||||| ||||| || ||||| ||||| || ||| ||||| ||| Sbjct 332803 TTTTGTTCAATTTTCTGGTTAAAGAAACGTGGTCTGATGCCTGGTTTATCATTCTCTAAT 332862 Query 65188 GAACTTATTTCCCGAGATGAGGG 65210 ||| | || || || ||||| || Sbjct 332863 GAATTGATATCTCGTGATGAAGG 332885 >seq8 Length=938756 Score = 102 bits (112), Expect = 1e-16 Identities = 259/389 (67%), Gaps = 4/389 (1%) Strand=Plus/Plus Query 177557 TTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCT 177616 |||||||||| | || || |||| | || || || || ||| ||| || | | || Sbjct 717293 TTTCAACAAATTCTCTAACTTTGTGTTTTTCACCAGTGGCAACACAATAATCGGCTGGCT 717352 Query 177617 CTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC 177676 ||||||||| ||||| | |||||||||||||||||||||||| ||||| ||||| |||| Sbjct 717353 TTTCTTGTTGGAGCATCAACCACATGGCTTCAACATAGTCCTTAGCATGTCCCCAATCTC 717412 Query 177677 TGGCAGCGTTGAGGTTA-CCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTG 177735 | |||| | | ||| || | | |||| || ||| | || ||| | Sbjct 717413 TTTCAGCATCCAAATTACCCAAATACAAGCAA-TCTTGCAATCCGAGATGAATACGAGCA 717471 Query 177736 AC-GCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794 || ||||| ||||||||| |||| |||||| | ||| || | ||| || || Sbjct 717472 ACAGCCAT-AGTAATCTTTCTTGTAACAAAGGTTGGACCACGACGAATACTTTCATGATT 717530 Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854 ||| || |||||| | ||| ||||| || | ||||| || || | || | ||| Sbjct 717531 GAAAAGAATTCCGTTCAAAGCAAACATATTGTAAGCTTCTCTATAGTTGATAACAATCCA 717590 Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGT 177914 | | | ||| |||| | |||| || ||||| ||||| || || || | Sbjct 717591 ATAACTGTACAACTTGGCGCAAGCATATGGAGAACGTGGATAGAATGGAGTGGTTTCTTT 717650 Query 177915 TTGTGGAGTTTCTCGGACTTTACCAAACA 177943 ||||||| ||||| | ||| |||| ||| Sbjct 717651 TTGTGGAATTTCTTGAACTAAACCATACA 717679 >seq66 Length=243952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 177557 TTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCT 177616 |||||||||| | || || |||| |||| || || || ||| || || | | || Sbjct 116031 TTTCAACAAATTCTCTAACCTTGTGTTTCTCACCAGTGGCAACACAGTAATCGGCTGGCT 115972 Query 177617 CTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC 177676 ||||||||||||||| | |||||| |||| |||||| ||||||||||| ||||| |||| Sbjct 115971 TTTCTTGTTGAAGCATCAACCACATAGCTTTAACATAATCCTTGGCATGCCCCCAATCTC 115912 Query 177677 TGGCAGC 177683 | |||| Sbjct 115911 TTTCAGC 115905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563753617920