Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq38 214 5e-50 seq6 116 1e-20 seq40 102 2e-16 seq62 100 8e-16 >seq38 Length=381539 Score = 214 bits (236), Expect = 5e-50 Identities = 679/1040 (65%), Gaps = 21/1040 (2%) Strand=Plus/Minus Query 155319 GCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTA 155378 || ||||| ||||| || |||||||| | | |||| ||||||| || ||| | Sbjct 296183 GCAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCG 296124 Query 155379 AATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGG 155438 |||| | | |||||||| || | ||||| ||||| ||||| || | ||| | ||| Sbjct 296123 AATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGT 296064 Query 155439 CGATGCCTGTAATTGCTCCTGCTTGTCTTCTT-GTTTGGGTAAAAATTCACATCAATAAT 155497 | || || | || ||| | |||| |||||| | ||||||| ||||| ||||||||| Sbjct 296063 CTGTGTCTAAAGTTACTCTT-CTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAAT 296005 Query 155498 GTTATTTAAATTTGTAAC---CAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAA 155554 ||||| ||||| |||| |||| |||| || || ||| || | ||| | Sbjct 296004 CTTATTCAAATT-GTAAGTGGCAAT--CTTGACAACTTCGTATAACTTTTGGTGATCATA 295948 Query 155555 TGTTTTA---TCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGC 155611 |||| | || ||||| ||| || | |||| ||||| || || |||||||| || Sbjct 295947 GGTTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGC 295888 Query 155612 AGTCTCCTTGTCGTCGCTGTA--TTCTACAATCTCACAGCACAGGTTAGAACTCTTGATG 155669 | || | | || ||| ||| | ||| ||| |||| ||||||| ||||||| Sbjct 295887 AACTTCATCA--GGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATG 295830 Query 155670 GTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGG 155729 || || | || | || || ||||| || ||||||| ||||||||| | ||||||||| Sbjct 295829 GTACCAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGG 295770 Query 155730 GTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGC 155789 || || || || || || || | ||| | |||||| || | || || || Sbjct 295769 ACACCAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTT 295710 Query 155790 TTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAA 155849 | ||| | ||||| |||||||| |||| | | | || ||||| || Sbjct 295709 CTCTTGGCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAA 295650 Query 155850 CAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT 155909 |||| || || | | || || || || || ||||| || | | | Sbjct 295649 ACATCAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTA 295590 Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||| | ||| || | ||| | |||| | | | |||| | || || || | ||| Sbjct 295589 ACACGTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGC-TCTGAT 295531 Query 155970 TCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 | || | | ||||||||||| | | || || || || ||| |||| || || Sbjct 295530 TTCTTCCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGG 295471 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGC 156085 |||| ||| || ||||| ||| || ||||| ||||| ||||| ||||| | || Sbjct 295470 TTCCAAATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGC 295411 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| | |||||| || | | ||| ||||| | |||||| || || || || || || | Sbjct 295410 AGTGTCATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCT 295351 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | || ||||| | | || ||| |||| | ||||||||||| | | || Sbjct 295350 AATGTATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTT 295291 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | || || ||| | |||| ||||||| | ||| |||||||| | ||| Sbjct 295290 GGAAATAAGGGCACAAGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCAT 295231 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 || | || | || ||||| | ||| || ||| || ||||| ||||| | ||| || Sbjct 295230 AGAAACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGG 295171 Query 156326 TGTTGCATGAATAAA-ATAC 156344 | ||||||||||| |||| Sbjct 295170 AGAGGCATGAATAAACATAC 295151 >seq6 Length=707703 Score = 116 bits (128), Expect = 1e-20 Identities = 306/460 (67%), Gaps = 13/460 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||||| | || | || || || || || | ||||||||| || Sbjct 321032 CTATCAAAACGACCAGGTCTTGTAAGAGCCTTATCCAAAATTTCAGATCTGTTTGTAGCG 321091 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGAT 288967 ||||| ||||| | | | | | |||| || ||||| || || | ||||| Sbjct 321092 GCCAAGACAACTACACCAGTAGCTGGAGTAAAACCGTCCAT--TTCAACAAGCAATTGAT 321149 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATC-ACCCGAATCGCTCCttttt 289026 | || || | ||| |||||||| ||| ||| | ||||| ||| | || |||| | Sbjct 321150 TGAGAGTATTTTCTCTTTCATCGTTTCTACC-CATGAATTTACCTGT---GCCTCTTTGT 321205 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 |||| |||||||||||||| ||||||||||| | | | |||| ||| | | || | Sbjct 321206 CTACCTACAGCATCAATTTCATCAATGAAAATAATAGATGGAGCATTATCCTTAGCTTCT 321265 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||||| | || | | || |||| ||||||| |||||| |||||||||||| Sbjct 321266 TTGAATAATTTACGAACTCTTGCTGGACCAACACCAACAACCATTTCAACAAATTCAGAA 321325 Query 289147 GCGG--ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 ||| ||||| | ||||| ||| || || || || |||||| | |||| | || Sbjct 321326 CCGGAAATACT--ATAGAATGGAACACCAGCCTCACCAGCAACTGCCTTTGCCAACAATG 321383 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 ||||||| || || || || || | | | | |||||||| | | | || ||| | Sbjct 321384 TCTTACCAGTACCTGGAGGACCAACAAGCAATGCACCCTTTGGAATTCTAGCACCAATAT 321443 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 | | |||| || |||| ||||| || |||| ||| Sbjct 321444 CTCTGAACTTCTTTGGATTCTTCAAAAAGTCGACAAATTC 321483 >seq40 Length=363092 Score = 102 bits (112), Expect = 2e-16 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||| |||||| ||| |||||||| || ||||| ||| || | ||||| ||||| Sbjct 332425 AATTCCTTCAA-ACGAGGAACACCCAAAGTAACGTT---CTTTGAAGACACACCGGCAAA 332480 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||||||||| ||| | |||||||| || ||||||||| ||| || |||| Sbjct 332481 GTGGAAAGTATTCAAAGTCATTTGAGTAGCAGGTTCACCAATAGATTGGGCAGCAACAGA 332540 Query 301935 ACCAACCATTTCTCCTGGT 301953 ||| |||||||| |||||| Sbjct 332541 ACCGACCATTTCACCTGGT 332559 Score = 95.1 bits (104), Expect = 4e-14 Identities = 213/316 (67%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || ||||||||| ||| || || | | || |||||||||||| |||||| || Sbjct 333255 CATGATATCTTCCATAGCCTTTATCAATCTTCTTTGGATATAACCAGTTTCAGATGTCTT 333314 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || | ||| ||||||||||||||| |||||||| | |||| || Sbjct 333315 GACGGCAGTATCGATCAAACCTTCACGACCACCCATAGTGTGGAAGAAGAATTCTTGAGG 333374 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCT---CAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 || || | | | | | || | ||||||||||||| || || || ||| Sbjct 333375 AGTTAAACCTC---TGAGGTAACTGTTAGCAACGAAACCACGACTTTCAGGACCATGGTC 333431 Query 302742 GAACTT-GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | ||| || |||||| || | || || || | || || || ||||| || || | Sbjct 333432 -ATCTTGGGCAAAGTGAGGTAAAGTTCTATTACGGAAACCATAAGGAATACGTTTACCTT 333490 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGG 302860 | ||||| ||||| || | || | ||| || || ||||| || | | | ||||| | Sbjct 333491 CGACGTTTTGCTGACCGACACAAGCAATAATTTGTGAAATGTTAATGTAAGAACCCTTAG 333550 Query 302861 AGCCAGCATTTACCAT 302876 | || || | ||||| Sbjct 333551 AACCGGCTGTCACCAT 333566 >seq62 Length=286411 Score = 100 bits (110), Expect = 8e-16 Identities = 291/443 (66%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 133227 TTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTA 133286 ||||||| || ||||||||| || |||||||| ||||||||| | || |||| Sbjct 260375 TTTTAGCTTTCTTTGCTGCGTCCGACGGTATTGTCAATGAAAATTTGTGCCAACAATTTA 260316 Query 133287 TGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAA 133346 ||| || || ||| | | ||||| | || || || | || ||||| || |||| Sbjct 260315 TGGCTGAGGTACAAATACCAGAAGCGAGATGTTTCTACGGTTTCCAAATTGCTATTGAAA 260256 Query 133347 ATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGA 133406 |||||||| || | ||| ||| || ||||| |||| || || ||| | ||| Sbjct 260255 ATATCCATGCTGAAATGTATAGTACACTCATTGAAACTTTGATAAAGGAT--CAAAGAGA 260198 Query 133407 AGCACA--AACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACT 133463 | ||| | ||||| |||||| | | | |||| | | | ||||||| | | Sbjct 260197 AAGACATCGTTTGTTCAATGCCATT-GATACTGTTCCATCTGTACAAAAGAAGGCACGTT 260139 Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT---TTTGCTACTCGTCTCGTTGCTT 133520 ||||||| |||||||| ||| || || | ||||| ||| | | || | Sbjct 260138 GGGCTATGAAATGGAT------CAATAATGAGAATTTATTTGCCGAACGTTTATTGGCCT 260085 Query 133521 TTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAA 133580 ||||| || || || ||||| ||| |||| | ||||| || ||||||||| | || | Sbjct 260084 TTGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTTTCTGTTCCATTTTTTGGTTGAAGA 260025 Query 133581 AGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCAC 133640 | |||||| | | ||||| || || || || ||| | || || | || || | | Sbjct 260024 AACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATGAATTAATCTCCCGTGATGAAGGAT 259965 Query 133641 TTCACACCGAATTTGCCGTTTTA 133663 | ||||| || |||||| |||| Sbjct 259964 TACACACTGATTTTGCCTGTTTA 259942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471802815592208