Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq102 105 8e-18 seq21 91.5 2e-13 seq9 82.4 1e-10 >seq102 Length=34929 Score = 105 bits (116), Expect = 8e-18 Identities = 346/525 (66%), Gaps = 26/525 (5%) Strand=Plus/Plus Query 172465 TTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA---GAA 172521 ||||| ||| ||||| || | |||| |||||||| || || ||| ||| ||| Sbjct 32109 TTTGGGATGGAAATGGATCGAGAGAATATTTAGATTCATTGGGATTTGA-GAATCGTGAA 32167 Query 172522 AAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATA 172581 ||| || |||| || || ||||||| ||||||||||||||| || | |||| Sbjct 32168 GAGATGG--ATTTGGGTCCTGTTTATGGTTTTCAATGGAGACATTGGGGTAGTTCATATG 32225 Query 172582 TCGACTGTG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAAT 172640 | | || |||||||||| ||| | ||||| || ||||| | || |||| | Sbjct 32226 AAAA-TATGCATACAGATTATACAAATAAGGGAGTTGATCAATTGAAGAAATGTATTGAA 32284 Query 172641 ACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTACCTCAA 172700 |||||| | || || ||| | |||| | || || | | ||||||||| ||| Sbjct 32285 ACTTTAAAGAATAATCCAACTAATAGACGTATTATATTATCTGCATGGAATGTA--TCAG 32342 Query 172701 CTTGA--TAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGT-----CAG 172753 || | ||| |||| | || ||||| ||| | ||||||| || ||| Sbjct 32343 ATTTACCTAATATGGCATTACCACCTTGTCATTTAATGTGTCAATTTTGGGTAGATACAG 32402 Query 172754 aaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGT 172813 | | ||| ||| || |||||| | |||||||||||| |||| | ||||| || || Sbjct 32403 ATACTAATGAAT--TAAGTTGTCAAATGTATCAAAGATCATGTGATATGGGATTAGGTGT 32460 Query 172814 ACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTAA--GTA-AATGGTGCAA 172870 || | |||||||| || ||| | || |||| | |||| | | || || || Sbjct 32461 TCCATTTAATATTGCATCATATGCTTTATTAACA---AGATTAATGGCACAAGTTTGTAA 32517 Query 172871 TTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGT 172930 ||||| || || | ||||||||||| || || ||| || || ||| |||||| | Sbjct 32518 TTTAAAACCTGGTGATTTTATTCATACATTGGGTGATACACATGTTTATAAGAATCATAT 32577 Query 172931 TGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCC 172975 ||||||||| || ||| | ||||| | ||| | || ||||| Sbjct 32578 TGAACCTTTGAAAAAACAAATTGAAAGAGATCCA-AAACATTTCC 32621 >seq21 Length=820293 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 194607 TTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCA 194666 || ||| || ||| | ||||| |||||| |||||||||||||||||| | | || | Sbjct 816775 TTTTTATCAACGTTTAAAACATATGGTTTTAGATAAAATGCATGCTAGATCTAAGGGACC 816834 Query 194667 AGTAACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATT 194726 || | | |||| |||||||| | |||||||| ||| || ||||||||||| Sbjct 816835 TGTTAGAATTTTAACAAGACAACCACTTGAAGGTCGTTCAAAAGAAGGTGGTTTAAGATT 816894 Query 194727 TGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG 194786 || ||||||||| || ||| | | | ||||||| | | ||| ||| ||||| Sbjct 816895 AGGTGAAATGGAACGTGATTGTTTAATTGGATATGGTGCAAGTGCATTATTATTAGAAAG 816954 Query 194787 AATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 194844 | | | || | ||| ||| | | | || ||||||| ||| ||||| |||||| Sbjct 816955 ATTAATGTTATCTTCAGATGAATATAAGGTACATGTTTGTGAAGATTGTGGAATGATT 817012 >seq9 Length=695587 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 || ||||| |||||||| ||| ||||| || || | | ||| | ||||||||| Sbjct 144320 ATCAAGGTAGCTCAATTGGCTGGTTATGTCAGCGAGCACAGTGCCTATCATCATGGTGAA 144379 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 166069 ||| | | | | ||| || | | | |||||||| |||||||| | |||||||| Sbjct 144380 CAATCTCTGTACGGAACCATTACAAGCATGGCCCAAGACTTTGTTGGAGCCAATAATATT 144439 Query 166070 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCT 166129 ||||||| | || |||||| |||||||| | || |||| ||| | ||| |||| Sbjct 144440 CCATTACTGTATCCAAGTGGTCAGTTTGGTACTCGTCTACAAGGCGGTGATGATGCTGCC 144499 Query 166130 GCATCAAGATATATTTATAC 166149 | |||||||| ||||| Sbjct 144500 AGTGCCAGATATATCTATAC 144519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632483401601920