Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq79 122 6e-23 seq36 96.9 2e-15 seq7 91.5 1e-13 seq10 84.2 1e-11 seq37 82.4 5e-11 >seq79 Length=326815 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || || ||||| |||| ||||| ||||| ||| ||||| |||||||||||||| Sbjct 172269 TTACCACCTCTCAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTATAGTCA 172328 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | | |||| |||| |||||| || || ||||| |||| ||| || ||| | Sbjct 172329 GAAAGGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGT 172388 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || ||||| || | || || || || | | || | ||||| | ||| Sbjct 172389 GGAATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCAATAGTATCATTAGATTCG 172448 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 172449 ACTTCAAGGGTAATTGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 172498 >seq36 Length=416450 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| ||||| ||| | || ||||| || || || ||||| || || | | || Sbjct 87096 CTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATATTGTAGTCTGAGAGAGTTCTACCA 87155 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| |||||| || |||||||||| || ||| || ||| | || | || |||||| Sbjct 87156 TCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTG 87215 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| | | || | || |||| ||||| || | || || Sbjct 87216 TCTTGGATCTTAGACTTGACGTTTTCAATAGTGTCGTTGGATTCGACTTCCAAAGTGATA 87275 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||||||||| || || || |||||| Sbjct 87276 GTCTTACCAGTGAGGGTCTTGACGAAAATTTGCATG 87311 >seq7 Length=693645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC-- 34806 ||||||| ||||| |||| |||| |||| ||| || || ||||||||||| || Sbjct 371038 TTCCTCCTCTCAATCTCAATACCAAATGAAGTGTGGAGTCTTTTTGAATGTTATAATCAT 370979 Query 34807 CGATAG-GCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865 |||| |||| |||| |||| ||| || || || |||| |||| ||| || ||| Sbjct 370978 TAATAGTTCTGC---CATCTTCCAATTGTTTACCTGCATAGATGAGTCTTTGTTGTTCTG 370922 Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCT 34925 | || | || ||||| || | || ||| |||||| | | || || ||||| | | Sbjct 370921 GTGGAATTCCTTCCTTATCTTGAATCTTTGACTTGACGTTTTCAATTGAATCATTAGATT 370862 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | || ||||| || || ||||| ||||| ||||| | ||||| Sbjct 370861 CAACTTCCAATGTGATGGTTTTACCAGTGAGTGTCTTGACAAATAATTGCAT 370810 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC-- 34806 ||||||| | ||| |||| |||| |||| ||| || || ||||||||||| || Sbjct 333652 TTCCTCCTCGCAATCTCAATACCAAATGAAGTGTGGAGTCTTTTTGAATGTTATAATCAT 333593 Query 34807 CGATAG-GCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865 |||| |||| |||| |||| ||| || ||||| |||| |||| ||| || ||| Sbjct 333592 TAATAGTTCTGC---CATCTTCCAATTGTTTACCGGCATAGATGAGTCTTTGTTGTTCTG 333536 Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCT 34925 | || | || ||||| || | | ||| ||| || | | || || ||||| | | Sbjct 333535 GTGGAATTCCTTCCTTATCTTGAACCTTTCTTTTAACATTTTCAATTGAATCATTAGATT 333476 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGT 34983 | || || | || ||||| || || ||||| ||||| || || | |||||||| || Sbjct 333475 CAACTTCCAATGTGATGGTTTTACCAGTGAGTGTCTTGACGAATAATTGCATGATTGT 333418 >seq10 Length=665159 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||||||||| || || | | |||| |||| |||||| || || ||| Sbjct 188437 TCCTTTTGAATGTTATAGTCAGAGAGAGTTCTACCATCTTCCAATTGCTTACCAGCAAAG 188496 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| ||| || ||| | || | || |||||||| | || ||| || || | Sbjct 188497 ATAAGTCTTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTTGACTTAACATTT 188556 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || | || || || | || || ||||| || || | ||||| ||| Sbjct 188557 TCAATAGTGTCGTTTGATTCAACTTCTAAAGTGATAGTCTTACCAGTCAAAGTCTTGACA 188616 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 188617 AAGATTTGCAT 188627 >seq37 Length=379849 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC-- 34806 ||||||| ||||| |||| |||| |||| ||| || || ||||||||||| || Sbjct 314622 TTCCTCCTCTCAATCTCAACACCAAATGAAGAGTGGAGTCTTTTTGAATGTTATAATCAT 314681 Query 34807 CGATAG-GCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865 || || |||| |||| |||| ||| || || ||| |||| || | ||| || ||| Sbjct 314682 TGAAAGTTCTGC---CATCTTCCAATTGTTTACCTGCGTAGATGAGCCTTTGTTGTTCTG 314738 Query 34866 GCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCT 34925 | || || || ||||| || | | ||| ||| || | | || || || || | | Sbjct 314739 GTGGAACTCCTTCCTTATCTTGAACCTTTCTTTTAACATTTTCAATTGAATCGTTTGATT 314798 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | || || | || || || || || ||||| ||||| ||||| | |||||||| Sbjct 314799 CAACTTCCAATGTGATAGTTTTACCAGTGAGTGTCTTGACAAATAATTGCATGAT 314853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689688005296