Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq102 120 4e-22 seq21 96.9 4e-15 >seq102 Length=34929 Score = 120 bits (132), Expect = 4e-22 Identities = 331/493 (67%), Gaps = 27/493 (5%) Strand=Plus/Plus Query 168592 TTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA---GAA 168648 ||||| | | ||||| || | |||| |||||||| || || ||| ||| ||| Sbjct 32109 TTTGGGATGGAAATGGATCGAGAGAATATTTAGATTCATTGGGATTTGA-GAATCGTGAA 32167 Query 168649 AAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGG-AGCTCAATAT 168707 ||| || |||| ||||| ||||||| ||||||||||||||| || || ||| ||| Sbjct 32168 GAGATGG--ATTTGGGTCCTGTTTATGGTTTTCAATGGAGACATTGGGGTAGTTCA-TAT 32224 Query 168708 ATTGACTGTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAA 168766 | | || |||||||||| || | ||||| || ||||| | || ||| | Sbjct 32225 GAAAA-TATGCATACAGATTATACAAATAAGGGAGTTGATCAATTGAAGAAATGTATTGA 32283 Query 168767 TACTTTACACAACAATCCGGAAAATAGAAGAATATTA-ATTAATAGT-TGGGATGTACCA 168824 |||||| | || ||||| |||||| | ||||| |||| | ||| ||||| || Sbjct 32284 AACTTTAAAGAATAATCCAACTAATAGACG--TATTATATTATCTGCATGGAATGTATCA 32341 Query 168825 CAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTG---CAATTTTATGTA--- 168878 | | ||| |||| | || |||||||| |||| || ||||||| ||| Sbjct 32342 GATTTACCTAATATGGCATTACCACCTTGTCA---TTTAATGTGTCAATTTTGGGTAGAT 32398 Query 168879 --AGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAG 168936 || | ||| ||| || |||||| |||||||||||||| |||| | ||||||| Sbjct 32399 ACAGATACTAATGAAT--TAAGTTGTCAAATGTATCAAAGATCATGTGATATGGGATTAG 32456 Query 168937 GAGTACCTTATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTA 168996 | || || | |||||||| || ||| | || |||||| | | || |||| Sbjct 32457 GTGTTCCATTTAATATTGCATCATATGCTTTATTAACAAGATTAATGGCACAAGTTTGTA 32516 Query 168997 ATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATG 169056 |||| | ||||| | ||||||||||| || || ||| || || ||| || ||| Sbjct 32517 ATTTAAAACCTGGTGATTTTATTCATACATTGGGTGATACACATGTTTATAAGAATCATA 32576 Query 169057 TTGAACCTTTAAA 169069 |||||||||| || Sbjct 32577 TTGAACCTTTGAA 32589 >seq21 Length=820293 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193811 TTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACA 193870 || |||||| ||| | |||||||||||| |||||||||||||||||| | | |||| Sbjct 816775 TTTTTATCAACGTTTAAAACATATGGTTTTAGATAAAATGCATGCTAGATCTAAGGGACC 816834 Query 193871 AGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATT 193930 || | | |||| |||||||| | |||||||| ||| || ||||||||||| Sbjct 816835 TGTTAGAATTTTAACAAGACAACCACTTGAAGGTCGTTCAAAAGAAGGTGGTTTAAGATT 816894 Query 193931 TGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAG 193990 || |||||||| || ||| | | | ||||||| | | ||| || ||||| Sbjct 816895 AGGTGAAATGGAACGTGATTGTTTAATTGGATATGGTGCAAGTGCATTATTATTAGAAAG 816954 Query 193991 AATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 194048 | | | || | ||| ||| | | | || ||||||| ||| ||||| |||||| Sbjct 816955 ATTAATGTTATCTTCAGATGAATATAAGGTACATGTTTGTGAAGATTGTGGAATGATT 817012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635171375259520