Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq102 147 3e-30 seq21 84.2 3e-11 seq2 84.2 3e-11 >seq102 Length=34929 Score = 147 bits (162), Expect = 3e-30 Identities = 394/589 (67%), Gaps = 15/589 (3%) Strand=Plus/Plus Query 180392 ACAACaaaaaaaaTAGTTTATAAAAATATTCTTAAAGAATTATTATGGATAATGAAAGGT 180451 ||||| |||| | || ||| ||| | || |||||||||||| ||| | || || Sbjct 32009 ACAACTAAAAGAGTATTTTGGAAAGGTGTTGCTAAAGAATTATTTTGGTTCATTTCTGGA 32068 Query 180452 TTAACAAATTCTAATTTGTTAAATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCG 180511 |||||| |||| | ||| ||| | | || | | ||| ||| ||||| ||| Sbjct 32069 AGTACAAATGCTAAAATTTTATCTGAACAAGATATTCATATTTGGGATGGAAATGGATCG 32128 Query 180512 CGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGAAAAGAAGGTGATTTAGGACCAATT 180571 | | | ||||||||| | |||||| | ||| |||| ||||| || || || Sbjct 32129 AGAGAATATTTAGATTCATTGGGATTTGAGAATCGTGAAGAGATGGATTTGGGTCCTGTT 32188 Query 180572 TATGGATTTCAATGGAGACATGCAGG-AGCTCAATATATTGACTGTG-ATACCAACTATA 180629 ||||| ||||||||||||||| || || ||| ||| | | || |||| | |||| Sbjct 32189 TATGGTTTTCAATGGAGACATTGGGGTAGTTCA-TATGAAAA-TATGCATACAGATTATA 32246 Query 180630 TCGGGCAAGGTA-TAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCC--CG 180686 | |||| | | || ||||| | || ||| |||||| |||| |||||||| | Sbjct 32247 -CAAATAAGGGAGTTGATCAATTGAAGAAATGTATTGAAACTTTAAAGAATAATCCAACT 32305 Query 180687 AATGCCGAAGAATAATCATAGATAGTTGGAATGTATCACAATTACCAGATATGGCTCTTC 180746 ||| || | || || || | |||||||||||| | ||||| ||||||| | | Sbjct 32306 AATA--GACGTATTATATTATCTGCATGGAATGTATCAGATTTACCTAATATGGCATTAC 32363 Query 180747 CACCATGTCACTGTTTGGTACAATTTTATGT---TAGAAATAAAATTTATTTAGATTGCC 180803 |||| ||||| | || ||||||| || || | ||| | | | ||| ||| | Sbjct 32364 CACCTTGTCATTTAATGTGTCAATTTTGGGTAGATACAGATACTAATGAATTAAGTTGTC 32423 Query 180804 AATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATT 180863 || ||||||||||||| ||| | ||||||||||| |||| ||||||||| | ||| Sbjct 32424 AAATGTATCAAAGATCATGTGATATGGGATTAGGTGTTCCATTTAATATTGCATCATATG 32483 Query 180864 CATTTTTGGTATGTGTTCTCTCA-AAGTGGTGCAATTTAACCCCTGGAAAATTTATTCAC 180922 | || || | | | | || |||| || ||||||| ||||| | |||||||| Sbjct 32484 CTTTATTAACAAGATTAATGGCACAAGT-TTGTAATTTAAAACCTGGTGATTTTATTCAT 32542 Query 180923 ACTTTTGGGGATGTTCATGTATATTCTAACCATATTGACCAATTAAAAA 180971 || || || ||| ||||| ||| || |||||||| | || |||| Sbjct 32543 ACATTGGGTGATACACATGTTTATAAGAATCATATTGAACCTTTGAAAA 32591 >seq21 Length=820293 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 201942 TATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTA 202001 ||||| ||| | |||||||||||| |||||||||||||| ||| | | || | || Sbjct 816779 TATCAACGTTTAAAACATATGGTTTTAGATAAAATGCATGCTAGATCTAAGGGACCTGTT 816838 Query 202002 ACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGA 202061 | || ||| | |||||| ||||| || ||| ||||| |||||||| || Sbjct 816839 AGAATTTTAACAAGACAACCACTTGAAGGTCGTTCAAAAGAAGGTGGTTTAAGATTAGGT 816898 Query 202062 GAAATGGAAAAAGATTGTATT-TTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAAT 202120 ||||||||| |||||| | |||| | |||| || | ||| ||| |||||| | Sbjct 816899 GAAATGGAACGTGATTGTTTAATTGGAT-ATGGTGCAAGTGCATTATTATTAGAAAGATT 816957 Query 202121 GTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGTACAAATTGTGGAATGATT 202175 | || | ||||||| | | | | |||| ||| | |||||||||||||| Sbjct 816958 AATGTTATCTTCAGATGAATATAAGGTACATGTTTGTGAAGATTGTGGAATGATT 817012 >seq2 Length=1001995 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 172886 ATTAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAA 172945 || |||||||||||| | |||||| || |||||||| | | || | ||||||||| Sbjct 680964 ATCAAGGTTGCTCAGCTTGCCGGTTACGTTTCAGAACAATCAGCCTACCATCATGGTGAA 680905 Query 172946 CAAAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATA 173005 | | | | || || | |||| | || || ||||||| |||| || || || Sbjct 680904 GACAGCTTGAATGGTACAGTTGTAAATATGGCTCAAAATTTTGTTGGTAGCAACAATATC 680845 Query 173006 ACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCC 173065 | || ||| | |||| |||| |||||||||| | ||| ||||||| || ||||| ||| Sbjct 680844 AACTTGCTTTATCCAGGTGGTATGTTTGGTACTCGTCTTCAAGGAGGAAAGGATTCTGCC 680785 Query 173066 GCATCAAGGTATATTTATACTAAA 173089 | || ||||| | ||| ||| Sbjct 680784 AGTCCCAGATATATCTTTACAAAA 680761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655273578256000