Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq21 91.5 2e-13 >seq21 Length=820293 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193364 TTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCA 193423 || ||| || ||| | ||||| |||||| |||||||||||||||||| | | || | Sbjct 816775 TTTTTATCAACGTTTAAAACATATGGTTTTAGATAAAATGCATGCTAGATCTAAGGGACC 816834 Query 193424 AGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATT 193483 || | | |||| |||||||| | |||||||| ||| || ||||||||||| Sbjct 816835 TGTTAGAATTTTAACAAGACAACCACTTGAAGGTCGTTCAAAAGAAGGTGGTTTAAGATT 816894 Query 193484 TGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG 193543 || ||||||||| || ||| | | | ||||||| | | ||| ||| ||||| Sbjct 816895 AGGTGAAATGGAACGTGATTGTTTAATTGGATATGGTGCAAGTGCATTATTATTAGAAAG 816954 Query 193544 AATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 193601 | | | || | ||| ||| | | | || ||||||| ||| ||||| |||||| Sbjct 816955 ATTAATGTTATCTTCAGATGAATATAAGGTACATGTTTGTGAAGATTGTGGAATGATT 817012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628525040394240