Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq52 107 3e-18 seq10 104 4e-17 seq79 102 1e-16 seq27 98.7 2e-15 seq38 95.1 2e-14 seq24 84.2 4e-11 >seq52 Length=331721 Score = 107 bits (118), Expect = 3e-18 Identities = 106/139 (76%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || |||||||||||||||| ||||| | |||||||| Sbjct 165104 AGAGTTGATTCCTTTTGAATATTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTA 165163 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || | |||||||||| |||| | || ||||||||||||||||||||| | Sbjct 165164 CCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTTGAT 165223 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 165224 TTAACATTTTCAATTGTAT 165242 Score = 107 bits (118), Expect = 3e-18 Identities = 110/146 (75%), Gaps = 11/146 (8%) Strand=Plus/Minus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| || ||| ||||||| || |||||||| || || |||||||| | ||||| || Sbjct 185902 CAAATGCAAAGTTGATTCCTTTTGAATATTATAGTCTGAGAGAGTTCTTCCATCTTCCAA 185843 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| |||||||||||| |||| | || |||||||||||||||| Sbjct 185842 TTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAAT 185783 Query 81746 CTTTGCTTTTATATTTTCAATCGTAT 81771 ||||| ||| | ||||||||| |||| Sbjct 185782 CTTTGATTTAACATTTTCAATTGTAT 185757 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 ||||||| || |||||||||||||||| ||||| | |||||||| ||| Sbjct 165567 ATTCCTTTTGAATATTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTACCAGCAA 165626 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| | ||||||| |||| | ||| ||||||||||||||||||| | || | || Sbjct 165627 AAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGACTTGACAT 165686 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 165687 TTTCAATAGTAT 165698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/144 (74%), Gaps = 11/144 (8%) Strand=Plus/Minus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| || ||| ||||||| || || ||||| || || |||||||| | ||||| || Sbjct 185446 CAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAGAGAGTTCTTCCATCTTCCAA 185387 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| |||||||||||| |||| | || ||||||| |||||||| Sbjct 185386 TTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGAAT 185327 Query 81746 CTTTGCTTTTATATTTTCAATCGT 81769 ||||| ||| | ||||||||| || Sbjct 185326 CTTTGATTTGACATTTTCAATAGT 185303 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/141 (74%), Gaps = 12/141 (9%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATA-GAGTTCTACAGTCTTCTAA----- 81696 || ||| ||||||| || ||||| |||||||||| ||||||| | |||||||| Sbjct 185668 CAAAGTTGATTCCTTTTGAATATTGTAATCAGATAAGAGTTCTTCCATCTTCTAATTGTT 185609 Query 81697 ------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTG 81750 |||| || |||||||||||| |||| | || |||||||||||||||| || | Sbjct 185608 TACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGAATTTTAG 185549 Query 81751 CTTTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 185548 ACTTGACATTTTCAATTGTAT 185528 >seq10 Length=665159 Score = 104 bits (114), Expect = 4e-17 Identities = 108/144 (75%), Gaps = 11/144 (8%) Strand=Plus/Plus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| || ||| ||||||| || || ||||| ||||| |||||||||| ||||| || Sbjct 188421 CAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCAGAGAGAGTTCTACCATCTTCCAA 188480 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| |||||||||||| ||||| | ||| ||||||| ||||| || Sbjct 188481 TTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTGGAT 188540 Query 81746 CTTTGCTTTTATATTTTCAATCGT 81769 ||||| || | ||||||||| || Sbjct 188541 CTTTGACTTAACATTTTCAATAGT 188564 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||||||||| |||| ||||| | |||||||| Sbjct 187972 AGAGTTGATTCCTTTTGAATATTATAATCGGATAATGTTCTTCCATCTTCTAATTGTTTA 188031 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || || | | ||||||| ||||| | || ||||||||||||||||||||| | Sbjct 188032 CCAGCGAAAATCAAACGTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATCTTTGAT 188091 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 188092 TTGACATTTTCAATAGTAT 188110 >seq79 Length=326815 Score = 102 bits (112), Expect = 1e-16 Identities = 107/140 (76%), Gaps = 13/140 (9%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || ||||| |||||||| | |||||||| ||||| || Sbjct 172527 AGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTTCTACCATCTTCCAATTGCTTA 172586 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| |||||||||||| |||| | || ||||||||||||||||| ||||| Sbjct 172587 CCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATC-TTGCT 172645 Query 81753 -TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 172646 CTTAACATTTTCAATAGTAT 172665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/138 (75%), Gaps = 12/138 (9%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 ||||| ||||||| || ||||| |||||||| | |||||||| ||||| || Sbjct 172755 AGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTTCTACCATCTTCCAATTGCTTA 172814 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | |||||||||| ||||| | || ||||||||||||||||||||| Sbjct 172815 CCAGCGAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATCTTTGA 172874 Query 81752 TTTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 172875 CTTGACATTTTCAATGGT 172892 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/133 (76%), Gaps = 13/133 (10%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 ||||||| || || ||||| ||||| || ||||||| ||||| || ||| Sbjct 172306 ATTCCTTTTGAATGTTATAGTCAGAAAGGGTTCTACCATCTTCCAATTGCTTACCAGCAA 172365 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT-TTTATA 81758 |||| |||||||||||| |||| | || ||||||||||||||||| ||||| || | | Sbjct 172366 AGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATC-TTGCTCTTAACA 172424 Query 81759 TTTTCAATCGTAT 81771 |||||||| |||| Sbjct 172425 TTTTCAATAGTAT 172437 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/145 (74%), Gaps = 13/145 (9%) Strand=Plus/Plus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| || |||| ||||||| || || ||||| || || || ||||||| ||||| || Sbjct 172976 CAAATGCAAAGTAGATTCCTTTTGAATGTTATAGTCTGAGAGGGTTCTACCATCTTCCAA 173035 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| | |||||||||| ||||| | || |||||||||||||||| Sbjct 173036 TTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTATCTTGAAT 173095 Query 81746 CTTTGCT-TTTATATTTTCAATCGT 81769 | ||||| || | ||||||||| || Sbjct 173096 C-TTGCTCTTAACATTTTCAATGGT 173119 >seq27 Length=417575 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/139 (75%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || || || |||||||| || ||||| | |||||||| Sbjct 23276 AGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTTCTTCCATCTTCTAATTGCTTA 23335 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| |||||||||||| |||| | || ||||||| ||||||||||||| Sbjct 23336 CCAGCAAAGATGAGTCTTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGAC 23395 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 23396 TTGACATTTTCAATAGTAT 23414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || || || ||||| |||| ||||| | |||||||| Sbjct 23732 AGAGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTTCTTCCATCTTCTAATTGCTTA 23791 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| |||||||||||| ||||| | ||| |||| || ||||||||||||| Sbjct 23792 CCAGCAAAGATGAGTCTTTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATCTTTGAC 23851 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 23852 TTGACATTTTCAATGGT 23868 >seq38 Length=381539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || ||||| |||||||| | ||||| | |||||||| Sbjct 331122 AGAGTTGATTCTTTTTGGATATTGTAATCAGACAATGTTCTTCCGTCTTCTAGTTGTTTA 331063 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || |||||||||||| |||| | || ||||||||||||||||||||| Sbjct 331062 CCAGCAAATATAAGTCTTTGTTGATCTGGTGGGATACCTTCCTTATCTTGAATCTTTGAC 331003 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 331002 TTGACATTTTCAATTGTAT 330984 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 13/138 (9%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || || |||||||| |||| ||||||| ||||| || Sbjct 330894 AGAGTTGATTCCTTTTGAATGTTATAATCGGATAATGTTCTACCATCTTCCAATTGCTTA 330835 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || |||||||||||| |||| | || ||||||||||||||||| ||||| Sbjct 330834 CCAGCAAATATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATC-TTGCT 330776 Query 81753 -TTTATATTTTCAATCGT 81769 || | |||||| || || Sbjct 330775 CTTAACATTTTCGATGGT 330758 >seq24 Length=427589 Score = 84.2 bits (92), Expect = 4e-11 Identities = 169/249 (68%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 142965 ACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAA 143024 || ||| |||||||||||| || |||| || | | ||||| ||||| ||||| ||| Sbjct 207347 ACTGATGAAGATGAGTGGAGTATGTGGAGTAAGAGAGGAGATCCTGTCTTACATATTGAA 207288 Query 143025 CTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAA 143084 || | | |||||| | | | | ||||| || || ||||| || ||||| Sbjct 207287 CTACGTAAATGGGCTCAAATACTGTTGATAGCTCCATTGGATTGTAATACTTTGGCAAAG 207228 Query 143085 ATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAAT 143144 || | || || || || ||||||||| | |||| | ||| ||||| |||||| | || Sbjct 207227 ATTTCAAATGGAATTTGTGATAATTTAGTGACATGTGTAGCCAGAGCTTGGGATTTGAAG 207168 Query 143145 AAACCTCTTATTTTTTG----TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 || || |||| ||| ||| || ||||||| || ||| |||||||| | || Sbjct 207167 AATTTTC-CATTTGTTGTGGCTCCAGCCATGAATACTCTCATGCATGAACATCCATTCAC 207109 Query 143201 AGAAAAACA 143209 || ||||| Sbjct 207108 AGCCAAACA 207100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903402346570240