Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq38 212 1e-49 seq2 156 1e-32 seq62 150 4e-31 seq102 118 3e-21 seq9 96.9 8e-15 seq16 87.8 4e-12 >seq38 Length=381539 Score = 212 bits (234), Expect = 1e-49 Identities = 532/801 (66%), Gaps = 17/801 (2%) Strand=Plus/Plus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || |||||||||||| | ||||| | ||||| || ||| ||| ||| || Sbjct 295057 GAAAGACCACAACACATGTTTATGCGTGTAAGTTTAGGTATCCACGGAGGTGACATTGAA 295116 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 | ||| || |||||| || | |||| | ||||||||| |||| || Sbjct 295117 AGAGCCATTCAAACCTATGATTTACTCAGTAGTGGTATGTTTATTCATGCCTCTCCAACA 295176 Query 110484 CTATTTAACGCAGGAACT--AATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || || || || ||| ||| |||| || |||||| || || | || | Sbjct 295177 TTGTTCAATGCTGGTACTCCAATTCC--ACAAATGAGTTCTTGTTTCCTCGTTTCTATGA 295234 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | |||||||| ||| | |||||||||||| | ||||| ||| |||||||| || Sbjct 295235 AGGATGATTCCATTCATGGTATTTATGATACCCTTAAGACTTGTGCCCTTATTTCCAAGT 295294 Query 110602 ACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 |||| || |||||| | ||| ||||| ||||| | | ||| || | || | Sbjct 295295 CTGCTGGTGGTATTGGTTTGTCA-GTTCACAATATTAGAGCTTCTGGATCATACATTAGA 295353 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || || | |||| ||| | |||||||||| ||||| ||||| |||||||| Sbjct 295354 GGTACAAACGGAACATCAAATGGTTTAATTCCAATGTTGAGAGTTTTCAATGACACTGCC 295413 Query 110721 AAATATGTGAATCAAGGTG---GTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 | |||||| ||||||||| |||||||||| || | ||||| || ||| | |||||| Sbjct 295414 AGATATGTCGATCAAGGTGGTGGTAAGAGAAAGGGTGCCTTTGCCATTTATTTGGAACCT 295473 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| || || || ||||| || || || | | || ||||| || |||||| Sbjct 295474 TGGCACTCTGACATTTTTGACTTTTTGGATTTGAGAAAGAATCACGGTAAGGAAGAAATC 295533 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 ||||| | |||||||| | | | ||| | ||| | |||||| |||||||| | Sbjct 295534 AGAGCTAGAGATTTATTCTTGGGTTTATGGGTCAACGATCTCTTCATGCAACGTGTTAAG 295593 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957 || ||| | ||||| || | ||||| || ||| ||||| ||||||| | Sbjct 295594 GATGATGCCGAATGGTCACTCTTCTGTCCAAATGAAGCTCAAGGTCTTGCTGATGTTTGG 295653 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA 111017 || |||| || | | | || |||||||||| |||||| ||| || || | Sbjct 295654 GGTGAAGAATTCAATCAATTATATACCAAATATGAAAGAGAAGGAAAG----GCCAAGAG 295709 Query 111018 ATTC--CA--GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 | | || ||||||||||| ||||| || ||||| | ||| |||||||||| Sbjct 295710 AACCATCAAGGCTCAAGAACTCTGGTTTGCTATTATTGAAGCCCAAATTGAAACTGGTGT 295769 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 || || || ||||| || ||| | |||| | ||||| |||||| || | || || Sbjct 295770 CCCATACATGTTGTACAAGGATTCTTGTAATAGAAAATCCAATCAACAAAACCTTGGTAC 295829 Query 111134 AATTAAGTCTAGTAATTTGTG 111154 || |||||| ||| ||||| Sbjct 295830 CATCAAGTCTTCTAACTTGTG 295850 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| |||||||| ||||| || || || |||||||| ||||||| ||| | ||| || Sbjct 205916 GTTCTCTTCAATAGACAACCTTCCCTTCACAAAATGTCCATGATGGGTCACAGAGTTAAG 205975 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA-CGCCTTATAATGCGGA 305448 || | || || || |||||||| | | | ||| | || || ||||| || Sbjct 205976 GTTATGCCTTACAGCACTTTCAGATTAAATCTCTCCG-TAGTAACTCCGTACAATGCCGA 206034 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||||| ||||||||||||||| ||||| | |||||||| Sbjct 206035 TTTTGACGGAGATGAAATGAATTTGCATTTGCCTCAATC 206073 >seq2 Length=1001995 Score = 156 bits (172), Expect = 1e-32 Identities = 354/530 (67%), Gaps = 2/530 (0%) Strand=Plus/Minus Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 ||| ||||||||||| ||| |||| | || ||||| ||| | | | |||||||| Sbjct 681100 AGACTTTATTGATAAGGAATTGATTCTCTTCTCTAAGGCTGACTGTAAGAGATCTATTCC 681041 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 | | | | |||||||| |||||| || | || || |||||||||||||||| || Sbjct 681040 TAGTATTGTTGATGGTTTAAAACCTGGTCAAAGAAAAATCTTATTCAGTTGTTTCAAGAG 680981 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 ||| | ||||||||| ||||||||| | || ||||| ||||||||||| ||| Sbjct 680980 AAACCTCAAAAAGGAAATCAAGGTTGCTCAGCTTGCCGGTTACGTTTCAGAACAATCAGC 680921 Query 279985 TTATCATCACGGTGAAG-CGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||||| | || | | ||| | ||||| | | || ||| ||||| Sbjct 680920 CTACCATCATGGTGAAGACAGCT-TGAATGGTACAGTTGTAAATATGGCTCAAAATTTTG 680862 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA 280103 | | | ||||| | || |||||| ||| |||| |||||| ||||| |||| Sbjct 680861 TTGGTAGCAACAATATCAACTTGCTTTATCCAGGTGGTATGTTTGGTACTCGTCTTCAAG 680802 Query 280104 ATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAACA 280163 ||||| ||| || ||| | | || || |||| | ||||| ||||| | Sbjct 680801 GAGGAAAGGATTCTGCCAGTCCCAGATATATCTTTACAAAATTATCAGAAATTACCAGAT 680742 Query 280164 AGTTATTTATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTA 280223 | | || || ||||| || | | | || | | || ||||| |||| | | Sbjct 680741 ACATTTTCCCTAAGGCTGATGATCCAGTACTTGAATATTTGGATGATGACGGTCAATCAA 680682 Query 280224 TTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAA 280283 | ||||||| || ||| | ||||||| |||| ||| | | || ||||| | |||| | Sbjct 680681 TAGAACCAAGATTTTACGTTCCAATTCTCCCAATGGTGTTAGTAAATGGATCCGAAGGTA 680622 Query 280284 TTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATT 280333 |||| || | | |||||| || || || |||||| |||||||| Sbjct 680621 TTGGTACTGCCTGGTCTACAAACATTGAAACCTATAATCCAGTTGATATT 680572 >seq62 Length=286411 Score = 150 bits (166), Expect = 4e-31 Identities = 329/488 (67%), Gaps = 16/488 (3%) Strand=Plus/Minus Query 131799 AAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAA 131858 ||||||| ||| |||||||| |||||||| | |||| ||||| | | | Sbjct 260153 AAAAGAAGGCACGTTGGGCTATGAAATGGATCAATAATGAG------AATTTATTTGCCG 260100 Query 131859 GACTTGTA---GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 || | || || |||||||||||||||||||| ||||| || ||| |||||||| | | Sbjct 260099 AACGTTTATTGGCCTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTTTCTGTTCCA 260040 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | |||||| | ||||| ||||| | |||||||| | |||| |||||| |||| |||| Sbjct 260039 TTTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATGAATTAATCT 259980 Query 131976 CGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATT--TGCTGA 132033 | | ||||||| ||| || ||||| ||||| ||| | ||| | ||| | | | Sbjct 259979 CCCGTGATGAAGGATTACACACTGATTTTGCCTGTTTATTATATTCCACATTGAAGTTTA 259920 Query 132034 TAAACTTGATG-AAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGG 132092 || ||| | || | | || | ||| | ||||| ||||| || || |||| Sbjct 259919 CCAAATTGCCGCAACAAGTTGTTCACTCACTAGTTTCTGAAGCTGTTGAAATTGAAAAGG 259860 Query 132093 AGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGG 132152 | || ||| ||| |||||| |||||||||| ||||| || | ||| | Sbjct 259859 AATTCATTTGTGAAAGTTTGCCAGTAGATTTGATTGGTATGAACTCTCGTTTAATGCAAC 259800 Query 132153 AGTACATTGAATTCGTTGCTGATCG--TTTAATTAACCAACTTGGATATTCCAAGATTTA 132210 | ||||||||| | ||||||||| | ||| || || ||||| ||| |||||||| Sbjct 259799 AATACATTGAAATGGTTGCTGATAGACTTTTGGTATCC--CTTGGTTATGATAAGATTTA 259742 Query 132211 TAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTT 132270 || | | ||| || | |||||| | ||||| || ||||| || ||||| Sbjct 259741 CAATTCTCCAAATCCATTCGATTGGATGAACATTATTTCTGTTAGTGGTAAGACAAACTT 259682 Query 132271 CTTCGAAA 132278 ||| |||| Sbjct 259681 CTTTGAAA 259674 >seq102 Length=34929 Score = 118 bits (130), Expect = 3e-21 Identities = 279/414 (67%), Gaps = 17/414 (4%) Strand=Plus/Minus Query 58927 ATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAAT 58986 ||||| ||||| |||||||||| | | ||||||||| || | |||||| ||| | Sbjct 32404 ATCTGTATCTACCCAAAATTGACACATTAAATGACAAGGTGGTAATGCCATATTAGGTAA 32345 Query 58987 ATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAG 59046 ||| ||||||||||||| || ||||| || | | | || | ||| || | | Sbjct 32344 ATCTGATACATTCCATGCAGATAATATAATACGTCTATTAGTTGGATTATTCTTTAAAGT 32285 Query 59047 TTCTTCACAATGTTTTATTTGGTCAAATCC---ATTAGTATATTCAGTATTGGCATCAAT 59103 ||| ||| | || | ||| |||| ||| ||| ||||| || |||| |||| | Sbjct 32284 TTCAATACATTTCTTCAATTGATCAACTCCCTTATTTGTATAATCTGTAT--GCATATTT 32227 Query 59104 GTAT-TTATCT-CCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGA---GTTCCT 59158 || | | || ||||||| | ||||||||||||||| ||||| || | | | || Sbjct 32226 TCATATGAACTACCCCAATGTCTCCATTGAAAACCATAAACAGGACCCAAATCCATCTCT 32167 Query 59159 TCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAA 59218 ||| ||| ||| || || || || | | ||||||| | | ||| ||||||||| Sbjct 32166 TCACGATTCTCA---AATCCCAATGAATCTAAATATTCTCTCGATCCATTTCCATCCCAA 32110 Query 59219 ATATGAACATTATTATCATTAAGAGATTTATTATCTGTTTTTCCAGATAGAAACCATAAC 59278 ||||||| || | ||| | | |||| || ||| ||||||| | ||||| || Sbjct 32109 ATATGAATATCTTGTTCAGATAAAATTTTAGCATTTGTACTTCCAGAAATGAACCAAAAT 32050 Query 59279 AATTCCTTAATGCA--AATTTTCCAAGCAACtttttttGTTGTAAGCATTGGAA 59330 ||||| ||| ||| | ||||||| ||| |||| ||||| | | ||||| Sbjct 32049 AATTCTTTA--GCAACACCTTTCCAAAATACTCTTTTAGTTGTTAATAATGGAA 31998 >seq9 Length=695587 Score = 96.9 bits (106), Expect = 8e-15 Identities = 343/529 (65%), Gaps = 8/529 (2%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATC-GTTCTATTCC 279864 || |||||| |||| ||||| || | || || ||| | | | ||| | |||||||| Sbjct 144185 GACTTTATTAATAATGAACTTATTCTCTTCTCGAATCAAAACAAT-ATCAGATCTATTCC 144243 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 | | ||||||| | ||||| || ||||||||| | || |||| |||| || Sbjct 144244 ATCTATTGTGGATGGACTCAAACCAAGTCAACGTAAGATTCTCTTTGCTTGTCTCAAGAG 144303 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 | | | | | ||||| || ||||| || || |||||||| || || | Sbjct 144304 AGATCTCAAAGATGAAATCAAGGTAGCTCAATTGGCTGGTTATGTCAGCGAGCACAGTGC 144363 Query 279985 TTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT 280044 |||||||| |||||| ||||| | || | ||| | | | |||||||| ||| | Sbjct 144364 CTATCATCATGGTGAACAATCTCTGTACGGAACCATTACAAGCATGGCCCAAGACTTTGT 144423 Query 280045 GGCTTCAAACAAC-TTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACA 280103 | | || || || || | || | |||| |||||| |||||| ||||| | || Sbjct 144424 TGGAGCCAATAATATTCCAT-TACTGTATCCAAGTGGTCAGTTTGGTACTCGTCTACAAG 144482 Query 280104 ATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAACA 280163 || | ||| || ||||| | || || |||| | | | ||||| | Sbjct 144483 GCGGTGATGATGCTGCCAGTGCCAGATATATCTATACTAGATTGAACAAGCTTACA--CG 144540 Query 280164 AGTTATTTA--TCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGC 280221 | | |||| |||| ||| || || || | | ||| || |||||| | Sbjct 144541 ATTGATTTTCCTCAAGGAAGATGATCAAATTTTGGACTATCAAGAAGAGGATGGTATGAT 144600 Query 280222 TATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGG 280281 ||||||||||| | |||| ||||||||| || ||| | ||||| ||||| || |||| Sbjct 144601 TATTGAACCAAAGTTTTATCTTCCAATTATTCCAATGTTGCTTGTCAATGGAGCAGAAGG 144660 Query 280282 AATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGAT 280330 || ||||| |||| ||||||||||| ||| | |||||||||||| Sbjct 144661 TATGGGAACTGGTTGGTCTACATCTATTCCATCTTTTAATCCAATTGAT 144709 >seq16 Length=536960 Score = 87.8 bits (96), Expect = 4e-12 Identities = 178/260 (68%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 131849 TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTC 131908 |||||| |||| | ||| ||| | ||| ||||| || ||| |||| | |||| Sbjct 475085 TTTTCTGAAAGATTGATAGGTTTAGTTTGCATTGAACAGATTTTCCTTTCTGCAAGTTTC 475144 Query 131909 TGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAA 131968 | | | || |||||||| |||||||||||||| ||| | | | || | ||||| | Sbjct 475145 TTTTCCATTTTTTGGCTAAAGAAGCGTGGATTAATGTCAGCTTTAACAATTTCCAACGAT 475204 Query 131969 TTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATA-GAAAATT 132027 || || | |||||||||| ||| ||| | ||||| |||||| |||||| |||| Sbjct 475205 TTGATTTTCAGAGATGAAGAATTTCATTC-CAATTTTTTATATT-CTCTATATTCGAATT 475262 Query 132028 TG----CTGATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATA 132083 || | ||||||| | ||| | || | |||| | | ||||||||||| | Sbjct 475263 TGAAACATTCTAAACTTCCTCAAACTCTCGTTCATTCACTTGTCAAGGAAGCAGTTGACA 475322 Query 132084 TCGAGAAGGAGTTTATTACA 132103 | || ||||| ||||||||| Sbjct 475323 TTGAAAAGGAATTTATTACA 475342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800878465424