Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq19 89.7 1e-12 seq25 86.0 1e-11 >seq19 Length=467654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTGCTAAAAGAACT 299107 |||||||| ||| | | ||||||||||||||| | | | | | | || || ||| | Sbjct 210539 TGCTGGTAGTAAATTCAGAGGTGAATTTGAAGAAAGATTGAAGAGTATCCTTAAGGAAGT 210598 Query 299108 A-AAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 ||||| | || || |||| | ||||||||||||||||| | || || |||| Sbjct 210599 TGAAGAATC-TGGTGATGTTATTCTCTTCATTGATGAAATTCACACCTTGTCAGGAGCTG 210657 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACGTG 299226 |||| | || || ||| |||| ||||||| |||||||| ||| || | | Sbjct 210658 GTTCTACTGGTGATAACTCTTTGGATGCTTCCAATATGATTAAGCCACTCCTTGCAAGAG 210717 Query 299227 GTGAGATTCGTGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAAAG 299286 ||| | | ||||||||||||| || ||||||||||||| |||| ||||||| Sbjct 210718 GTGTATTGAGATTAATTGGTGCAACTACTCCAACTGAATATCGTAAATATATTGAGAAAG 210777 Query 299287 A 299287 | Sbjct 210778 A 210778 >seq25 Length=747259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/245 (69%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 299050 CTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGA--CAATTTGCTAAAAGAACT 299107 |||||| ||| | | | ||||||||||||||||| | | ||||| |||| ||| | Sbjct 403143 CTGGTAGTAAATTTAGAGGTGAATTTGAAGAACGTGTACAGGCAATT--CTAAGAGATGT 403200 Query 299108 AAAGAAACGTGA---AAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGC 299164 ||| ||| | | | | | |||| | ||||||||||||||||| || || || | || Sbjct 403201 TAAGGAACATCAGGGAGAAATTATTCTATTCATTGATGAAATTCACATGATTGTAAGTGC 403260 Query 299165 TGGTTCCGCAAGTAATGGTTCTATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACG 299224 |||| || | | |||||| | || ||| |||||| | || ||| | || | Sbjct 403261 TGGTAGTGC---TCAAGGTTCTCTTGATATGGCAAATATGTTAAAACCATATTTAGCAAG 403317 Query 299225 TGGTGAGATTCGTGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAA 299284 || || ||| | |||||||| ||||| | ||||||||| | | |||| || || Sbjct 403318 AGGAGAACTTCATTGTATTGGTGCTACAACTTTGGATGAATATAGATTATATATTGAAAA 403377 Query 299285 AGATA 299289 ||||| Sbjct 403378 AGATA 403382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115159998105296