Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq84 100 3e-16 seq52 98.7 9e-16 seq14 96.9 3e-15 seq7 96.9 3e-15 seq79 89.7 5e-13 seq38 89.7 5e-13 seq27 87.8 2e-12 seq10 84.2 2e-11 >seq84 Length=160583 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| || ||||| | |||| || ||||||| ||||| || || | || | ||| Sbjct 128752 CAACACTAAATGCACAGTTGAATCCTTTTGAAGATTGTAATCACTAACTGTTCTTCCATC 128811 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||||| || | ||| || | || |||||||||| || || || || ||||| Sbjct 128812 TTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGATGGAATTCCCTCCTTATC 128871 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || ||||||||||| ||||| |||||||| ||| |||| ||| | || | || Sbjct 128872 AAATATCTTTTGTTTCAAATGTTCAACAGTATCATTCGATTCCATTTCAATTGTAATTGT 128931 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || ||||||| |||| ||||| Sbjct 128932 CTTTCCAGTTAGGGTTTTTACAAAAAGTTGCAT 128964 >seq52 Length=331721 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | |||||||||||| | |||| || ||||||||||| ||||| | || | Sbjct 185458 CAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAGAGAGTTCT 185399 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | |||| || | ||||||||||| || || ||||| Sbjct 185398 TCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGGATACCTTC 185339 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| ||| | | ||| | ||| ||| | | || ||||| | || Sbjct 185338 CTTGTCTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTGATTCAACTTCCAATGT 185279 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| | ||||| | |||||| ||||| Sbjct 185278 AATTGTCTTACCAGTTAATGTTTTAACGAAAATTTGCAT 185240 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||||||||| | |||| || |||||||| || ||||| | || | |||| Sbjct 185907 AAAACCAAATGCAAAGTTGATTCCTTTTGAATATTATAGTCTGAGAGAGTTCTTCCATCT 185848 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | |||||||| | | |||| || | ||||||||||| || || ||||| ||||| Sbjct 185847 TCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTATCT 185788 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||| ||| ||| | | ||| | ||||| | | ||| ||||| | || | || Sbjct 185787 TGAATCTTTGATTTAACATTTTCAATTGTATCATTGGACTCGACTTCCAATGTAATTGTC 185728 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || | |||||| | |||||| ||||| Sbjct 185727 TTTCCTGTTAAAGTTTTGACGAAAATTTGCAT 185696 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAAT 131969 |||||| ||||| | |||| |||||||||||||| || || | | ||| | | | | Sbjct 165319 CAAAACTAAATGCAAAGTTGATTCTTTTTGAATGTTATAATCAGATAATGTTCTTCCA-T 165377 Query 131970 CTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTAT 132029 |||| | |||||||| | | |||| || | ||||||||||| || || ||||| || | Sbjct 165378 CTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTCCTTGT 165437 Query 132030 CGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCG 132089 | |||||| || | | ||| | ||| || | | || ||||| | || | | Sbjct 165438 CTTGAATTTTAGACTTGACATTTTCAATAGTGTCATTTGATTCAACTTCCAAAGTGATAG 165497 Query 132090 TTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | |||||||||| |||||| | || || ||||| Sbjct 165498 TCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 165531 >seq14 Length=782252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| || ||||| | |||| || ||||||| ||||| || | ||||| | Sbjct 722741 CAATCTCAATACTAAATGCACAGTTGAGTCCTTTTGAAGATTGTAATCATTAATGGTTCT 722800 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||| || | ||| || | || |||||||||| ||| || ||||| Sbjct 722801 GCCATCTTCCAATTGTTTTCCTGCATAAATCAATCGTTGTTGATCTGAAGGAATACCTTC 722860 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || |||||||||| | || |||||||| ||| |||| ||| | || Sbjct 722861 TTTATCAAATATCTTTTGTTTCATATTCTCAACAGTATCACTCGATTCCATTTCAATTGT 722920 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTA 132110 | || || ||||| | ||||||| Sbjct 722921 AATTGTCTTTCCAGTTAAGGTTTTTA 722946 >seq7 Length=693645 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| | ||| |||||||| | | || |||||||||||||| || || | || || Sbjct 333644 CGCAATCTCAATACCAAATGAAGTGTGGAGTCTTTTTGAATGTTATAATCATTAATAGTT 333585 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 | |||||| | |||||||||| |||||| || | ||||| ||||| || || ||| Sbjct 333584 CTGCCATCTTCCAATTGTTTACCGGCATAGATGAGTCTTTGTTGTTCTGGTGGAATTCCT 333525 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| || ||| ||| | | ||| | | ||| | | || ||||| | Sbjct 333524 TCCTTATCTTGAACCTTTCTTTTAACATTTTCAATTGAATCATTAGATTCAACTTCCAAT 333465 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATTCCTTTT 132142 || | ||||||||||| || || || | ||| | ||||||| || ||| | | |||| Sbjct 333464 GTGATGGTTTTACCAGTGAGTGTCTTGACGAATAATTGCATGA-TTGTTA-AGTTGTTTT 333407 Query 132143 CTCTT 132147 |||| Sbjct 333406 TTCTT 333402 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||| | |||| |||||||||||||||||||| | || || | ||| Sbjct 579299 CAACACCAAATGAAGTGTTGAATCTTTTTGAATGTTGTAGTCATTAATAGTTCTGCCATC 579358 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | |||||||| | | |||| || | ||||||||||| | || ||||| ||||| Sbjct 579359 TTCCAATTGTTTACCTGCAAAGATGAGTCTTTGTTGATCTGGTGAAATTCCTTCCTTATC 579418 >seq79 Length=326815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| ||||| || | | |||| || ||||||||||| ||||| | ||| | Sbjct 172280 CAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTATAGTCAGAAAGGGTTCT 172339 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | || ||||| | | |||| || | ||||||||||| || || ||||| Sbjct 172340 ACCATCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGAATACCTTC 172399 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| ||| || || | | ||| | |||||| | | || ||||| | || Sbjct 172400 CTTATCTTGAATCTTGCTCTTAACATTTTCAATAGTATCATTAGATTCGACTTCAAGGGT 172459 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| ||||| || | ||| || ||||| Sbjct 172460 AATTGTCTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 172498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | |||||||||||| | | || || ||||||||||| ||||| | ||| | Sbjct 172964 CAATCTCAAAACCAAATGCAAAGTAGATTCCTTTTGAATGTTATAGTCTGAGAGGGTTCT 173023 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | || ||||| | | |||| | | |||||||||||||| || ||||| Sbjct 173024 ACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTC 173083 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| ||| || || | | ||| | || ||| | | || ||||| | || Sbjct 173084 CTTATCTTGAATCTTGCTCTTAACATTTTCAATGGTGTCGTTTGATTCAACTTCCAAGGT 173143 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | |||||||| |||| |||||| | ||| || ||||| Sbjct 173144 AATAGTTTTACCGGTCAAAGTTTTAACGAAGATTTGCAT 173182 >seq38 Length=381539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | |||||| ||||| | |||| |||||||| || ||||| || || || | Sbjct 331141 CAATCTCAAAACTAAATGAAGAGTTGATTCTTTTTGGATATTGTAATCAGACAATGTTCT 331082 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| || |||||||| | | | || || | ||||||||||| || || ||||| Sbjct 331081 TCCGTCTTCTAGTTGTTTACCAGCAAATATAAGTCTTTGTTGATCTGGTGGGATACCTTC 331022 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| ||| ||| || | | ||| | ||||| | | || ||||| | || Sbjct 331021 CTTATCTTGAATCTTTGACTTGACATTTTCAATTGTATCATTGGATTCAACTTCCAATGT 330962 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||| | ||||| | |||||| ||||| Sbjct 330961 AATGGTTTTACCAGTTAATGTTTTAACGAAAATTTGCAT 330923 >seq27 Length=417575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||| | ||| | |||| || |||||||||||||| ||| | || | ||| Sbjct 23719 CAAAACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCGGATAATGTTCTTCCATC 23778 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | || ||||| | | |||| || | |||||||||||||| || |||||||| || Sbjct 23779 TTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGATCTGGAGGGATTCCTTCTTTGTC 23838 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| ||| || | | ||| | || ||| | | || ||||| | || | || Sbjct 23839 TTGAATCTTTGACTTGACATTTTCAATGGTGTCGTTTGATTCAACTTCTAAAGTGATAGT 23898 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||||| ||| || | ||| || ||||| Sbjct 23899 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 23931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| ||||| || | | || || |||||||||||||| || | ||| | Sbjct 23257 CAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTTCT 23316 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | || ||||| | | |||| || | ||||||||||| || || ||||| Sbjct 23317 TCCATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGAATACCTTC 23376 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| || | | ||| | |||||| | | || ||||| | || Sbjct 23377 CTTGTCTTGAATCTTTGACTTGACATTTTCAATAGTATCATTAGATTCGACTTCAAGGGT 23436 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||||| |||||| | ||| || ||||| Sbjct 23437 AATTGTCTTACCAGTCAAAGTTTTGACGAAGATTTGCAT 23475 >seq10 Length=665159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | |||||| || || | | || || |||||||| ||||| || | ||| | Sbjct 188181 CAATCTCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTGTAATCAGATAAGGTTCT 188240 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | | || | | ||||||||||| || || ||||| Sbjct 188241 TCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATTCCTTC 188300 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || |||||| || | | ||| | |||||| | | || ||||| | || Sbjct 188301 TTTGTCTTGAATTTTAGACTTGACATTTTCAATAGTATCATTTGATTCAACTTCAAGAGT 188360 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||||||| || ||||| | |||||| ||||| Sbjct 188361 GATAGTTTTACCAGTGAGTGTTTTAACGAAAATTTGCAT 188399 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| || |||||||| || ||||| | ||| | |||||| Sbjct 188647 ACCAAGTGAAGGGTTGATTCCTTTTGAATATTATAGTCAGAAAGGGTTCTTCCATCTTCC 188706 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||| | | || | ||| |||||||||||||| || ||||| ||||| | Sbjct 188707 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGA 188766 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | ||| | ||||||| | | || ||||| | || | || || Sbjct 188767 ATCTTGCTCTTAACATTTTCAATAGTATCGTTGGATTCAACTTCTAAAGTGATAGTCTTT 188826 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCA-TGACTTATTAG 132133 || || | ||||| | |||||| |||| || ||||||| Sbjct 188827 CCTGTTAATGTTTTAACGAAAATTTGCATTGTGTTATTAG 188866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606529210240