Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq79 116 3e-21 seq38 107 2e-18 seq37 107 2e-18 seq10 107 2e-18 seq52 102 7e-17 seq30 102 7e-17 seq27 98.7 9e-16 >seq79 Length=326815 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| |||||||| || ||| |||||||||||||| || || | Sbjct 172956 CCACCTCTCAATCTCAAAACCAAATGCAAAGTAGATTCCTTTTGAATGTTATAGTCTGAG 173015 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||| |||||||| ||||| ||||| | || || || | ||| Sbjct 173016 AGGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCTGGAGGG 173075 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||| ||| | | || | | |||||| | ||||| || Sbjct 173076 ATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCAATGGTGTCGTTTGATTCAACT 173135 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| ||||||||||| || || || ||||| Sbjct 173136 TCCAAGGTAATAGTTTTACCGGTCAAAGTTTTAACGAAGATTTGCAT 173182 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 ||||| ||||| || | || ||||||||||| |||||||| | ||| |||| | Sbjct 172740 CTCAAAACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTTCTACCA 172799 Query 35582 TCGTCCAGCTGCTTACCCGC-AAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTT 35640 || |||| |||||||| || ||| ||||| | || || || | ||| | | ||||| Sbjct 172800 TCTTCCAATTGCTTACCAGCGAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTT 172859 Query 35641 GTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 || |||||| ||| | | || | | |||||| | ||||| || |||| ||||| Sbjct 172860 ATCTTGAATCTTTGACTTGACATTTTCAATGGTGTCGTTTGATTCAACTTCCAGAGTGAT 172919 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| |||||||| || ||||| || ||||| Sbjct 172920 TGTCTTACCAGTCAAAGTCTTGACAAA-ATTTGCAT 172954 >seq38 Length=381539 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||||||||| || || ||| |||||||||||||| ||||||| | Sbjct 330693 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGAATGTTATAATCGGAC 330634 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| | || |||| || ||||| ||||| ||||| || || || || | || Sbjct 330633 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 330574 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| ||||| ||| | | || | | || || | ||||| || Sbjct 330573 ATTCCTTCTTTGTCTTGAATCTTACTCTTGACATTTTCAATTGTATCATTGGATTCGACT 330514 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || || ||||| || || || ||||| Sbjct 330513 TCCAAAGTGATAGTCTTTCCAGTTAATGTTTTAACGAAAATTTGCAT 330467 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| || ||||| | || |||||||||||||| ||||||| Sbjct 330921 CCACCTCTCAATCTCAAAACTAAATGGAGAGTTGATTCCTTTTGAATGTTATAATCGGAT 330862 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || |||| |||||||| |||||||| | | || || || | ||| Sbjct 330861 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAATATAAGTCTTTGTTGATCTGGTGGA 330802 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||| ||| | | || | | |||||| | ||||| || Sbjct 330801 ATACCTTCCTTATCTTGAATCTTGCTCTTAACATTTTCGATGGTGTCGTTTGATTCAACT 330742 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| ||||| || || ||||| || ||||| Sbjct 330741 TCTAAAGTGATAGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 330695 >seq37 Length=379849 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| |||||||| | || |||||||||| |||||||| | Sbjct 314396 CCACCTCTCAATCTCAATACCAAATGGACAGTTGAATCCTTTTGAAGATTGTAATCTGAG 314455 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| || ||||| ||| | ||||| || || || ||||| ||| Sbjct 314456 ATAGTTCTACCATCTTCCAATTGTTTACCAGCATAAATCAAACGTTGTTGATCCGATGGA 314515 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || | |||||||| |||| | | | | ||||| |||||||| Sbjct 314516 ATTCCTTCCTTATCAAAAATCTTTTGTTTCATATTCTCAATAGTGTCATTCGATTCCGTT 314575 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | || || || || || ||||| ||||||||||| | ||||||| Sbjct 314576 TCAATAGTAATGGTCTTTCCTGTCAATGTTTTCACAAAAAGTTGCATTC 314624 >seq10 Length=665159 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| || || |||||||| || || |||||||||||||| || || | Sbjct 188401 CCACCTCTTAATCTTAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCAGAG 188460 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| |||||||| ||||| || | | || || || | ||| Sbjct 188461 AGAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGG 188520 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||| ||| | | || | | |||||| | ||||| || Sbjct 188521 ATTCCTTCCTTGTCTTGGATCTTTGACTTAACATTTTCAATAGTGTCGTTTGATTCAACT 188580 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 188581 TCTAAAGTGATAGTCTTACCAGTCAAAGTCTTGACAAAGATTTGCAT 188627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| || || || || ||| ||||||||||| |||||||| | Sbjct 188173 CCACCTCTCAATCTCAAAACTAAGTGCAAAGTAGATTCCTTTTGAATATTGTAATCAGAT 188232 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| | || || | || ||||| ||||| ||||| | || || || | ||| Sbjct 188233 AAGGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 188292 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| | ||| | | || | | || || | ||||| || Sbjct 188293 ATTCCTTCTTTGT-CTTGAATTTTAGACTTGACATTTTCAATAGTATCATTTGATTCAAC 188351 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| |||||||| || | ||||| || || || ||||| Sbjct 188352 TTCAAGAGTGATAGTTTTACCAGTGAGTGTTTTAACGAAAATTTGCAT 188399 >seq52 Length=331721 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| ||||| || ||||| || || || ||||||||||| ||||| | Sbjct 165305 CCACCTCTTAATCTCAAAACTAAATGCAAAGTTGATTCTTTTTGAATGTTATAATCAGAT 165364 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || |||| || ||||| ||||| || | | || || || | ||| Sbjct 165365 AATGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGTGGA 165424 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||| | ||| ||| | ||| | | || | | ||||| | ||||| || Sbjct 165425 ATACCTTCCTTGT-CTTGAATTTTAGACTTGACATTTTCAATAGTGTCATTTGATTCAAC 165483 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 165484 TTCCAAAGTGATAGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 165531 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| |||||||| || || |||||||||||||| || || | Sbjct 185466 CCACCTCTCAATCTCAAAACCAAATGCAAAGTTGATTCCTTTTGAATGTTATAGTCTGAG 185407 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| || ||||| ||||| || | | || || || | || Sbjct 185406 AGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATGAGTCTTTGTTGATCTGGTGGG 185347 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| || | | || | | |||||| | ||||| || Sbjct 185346 ATACCTTCCTTGTCTTGAATCTTTGATTTGACATTTTCAATAGTGTCGTTTGATTCAACT 185287 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||| || || || ||||| || || ||||| || || || |||||| ||| Sbjct 185286 TCCAATGTAATTGTCTTACCAGTTAATGTTTTAACGAAAATTTGCATTGTGT 185235 >seq30 Length=401612 Score = 102 bits (112), Expect = 7e-17 Identities = 168/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 35503 TTTATTT--CCACCACGT---AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATG 35557 ||||||| ||||| | | || |||||||||||||| | ||| |||||||||| | Sbjct 53640 TTTATTTAACCACCTCCTCTCAATCTCAACACCAAATGCACAGTAGAATCCTTTTGAAGG 53581 Query 35558 TTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGC 35617 |||||||| | |||| | || || | || || || ||| | ||||| || || Sbjct 53580 TTGTAATCACTAATTGTTCTTCCATCTTCTAATTGTTTTCCTGCATAAATCAATCGTTGT 53521 Query 35618 TGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCG 35677 || || ||||||| || ||||| || | |||||||| |||| | | | | || || Sbjct 53520 TGATCTGAAGGAATGCCTTCCTTATCAAATATCTTTTGTTTCATATTCTCAATAGTATCA 53461 Query 35678 CTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| ||||| || | || || ||||| || || || ||||| ||||| | |||||| Sbjct 53460 TTCGCTTCCATTTCAATAGTAATTGTTTTTCCAGTTAAGGTTTTTACAAAGAGTTGCATT 53401 Query 35738 C 35738 | Sbjct 53400 C 53400 >seq27 Length=417575 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| ||||| || | ||| | || |||||||||||||||||||||| Sbjct 23705 CCACCTCTTAATCTCAAAACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCGGAT 23764 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || || | |||||||| ||||| || | | || || || | ||| Sbjct 23765 AATGTTCTTCCATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGATCTGGAGGG 23824 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| |||||| ||| | | || | | |||||| | ||||| || Sbjct 23825 ATTCCTTCTTTGTCTTGAATCTTTGACTTGACATTTTCAATGGTGTCGTTTGATTCAACT 23884 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| |||||||| || || || || ||||| Sbjct 23885 TCTAAAGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 23931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 35503 TTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| || ||||| | || ||||| ||||| || | || |||||||||||||||| Sbjct 23241 TTTAGTTACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGT 23300 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||| | | ||||| | || || | |||||||| ||||| || | | || || | Sbjct 23301 AATCAGAAAGGGTTCTTCCATCTTCTAATTGCTTACCAGCAAAGATGAGTCTTTGTTGAT 23360 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | |||| | |||||||| |||||| ||| | | || | | || || | | Sbjct 23361 CTGGTGGAATACCTTCCTTGTCTTGAATCTTTGACTTGACATTTTCAATAGTATCATTAG 23420 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || | || || || ||||| ||||||||||| || || || ||||| Sbjct 23421 ATTCGACTTCAAGGGTAATTGTCTTACCAGTCAAAGTTTTGACGAAGATTTGCAT 23475 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| ||||| || | || |||||||| ||||||||||| | | Sbjct 23477 CCACCTCTCAATCTCAATACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGAC 23536 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| | || |||| || ||||| || || ||||| | || || || | ||| Sbjct 23537 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGG 23596 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || |||||| ||| | | || | | ||||| | || || || Sbjct 23597 ATTCCTTCCTTATCTTGGATCTTAGACTTAACATTTTCAATTGTGTCATTGGACTCGACT 23656 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || |||||||| || || || ||||| Sbjct 23657 TCCAATGTAATGGTCTTTCCTGTTAAAGTTTTAACGAAAATTTGCAT 23703 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| || | ||||| || | || ||||||||||| |||||||| | | Sbjct 23933 CCACCTCTTAATCTGAGGACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAATCAGAC 23992 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| | || |||| || ||||| || || ||||| | || || || | |||| Sbjct 23993 AAGGTTCTTCCATCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCTGGAGGA 24052 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG--CTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | ||||| | | ||| ||||| ||| | || | | ||||| | ||||| | Sbjct 24053 ATACCTTCCTTAT-CTTGA-ATTTTGCTCTTAACGTTTTCAATGGTGTCATTGGATTCAA 24110 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | |||| || || |||||||| || || ||||| || || || |||||| Sbjct 24111 CTTCCAAGGTAATAGTTTTACCAGTTAATGTTTTAACGAAAATTTGCATT 24160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789182222720