Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq66 165 1e-35 seq8 143 4e-29 >seq66 Length=243952 Score = 165 bits (182), Expect = 1e-35 Identities = 440/658 (67%), Gaps = 26/658 (4%) Strand=Plus/Plus Query 161114 TACGGGGATTTGACTGACTCCCTGAACATAGTCTCTATCATT--AAGGAAGTAGAACCTG 161171 ||||| ||||| ||||| | ||||| | ||||||||| || || || ||||| Sbjct 55241 TACGGTGATTTAACTGATACTGGTAACATTATATCTATCATTTCAAAGA--TAAGACCTG 55298 Query 161172 ATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAAT 161231 |||| || |||||||| || || || |||||| ||| || || || ||||||| Sbjct 55299 ATGAAATATACAACCTGGGAGCTCAATCTCATGTTAAAATAAGCTTTGAAATGCCTGAAT 55358 Query 161232 ATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAG 161291 | |||||| | ||||| | | || ||| || || | | || ||| | || | Sbjct 55359 ACACAGCAAATGTTGATGGTATTGGTACCTTACGATTTCTTGAAGCAATCCGAGCATGTG 55418 Query 161292 GTATG---AC--AGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346 || || || ||| | | | |||| | || ||| || ||| |||||||||| || Sbjct 55419 GTTTGGAAACGAAGACAAGATTT-TATCAAGCAAGCA--CATCAG--AGTTGTATGGCTT 55473 Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 ||||||||| | || || |||||||| || || || || || |||||||| |||| Sbjct 55474 GGTACAAGAAATTCCTCAAAAAGAAACTACTCCATTTTATCCTCGATCTCCTTATGCTTG 55533 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 ||||| | || | || |||||||| | ||||| ||||| |||| ||| ||| Sbjct 55534 CGCTAAGTTGTACAGTTACTGGATTGTTATTAACTATAGAGAAGCTTATAACATGTTCGC 55593 Query 161467 CAGTAGTGGTATTCTATTCAACCATG--AGTCACCACGACGGGGTGAGACTTTCGTAACC 161524 | | ||||||||| ||||| |||| ||| | || | ||| || || ||||| Sbjct 55594 CTTGAATGGTATTCTTTTCAATCATGAAAGTATC--CGTAGAGGTCCAACCTTTGTAACA 55651 Query 161525 CGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTA 161584 | || || || | || | || | |||||| | ||| || || || || | || | Sbjct 55652 AGAAAAATCACAATGGCAGTAGCTCGTATTCATCTAGGTCTTCAAGAGTGCTTGTATTTG 55711 Query 161585 GGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGG 161644 |||||| | | | | |||||||||| || || | || || || |||||||||||| Sbjct 55712 GGTAATTTGGATGCTGAAAGAGATTGGGGCCACGCAAAGGATTACGTTGAGGCTATGTGG 55771 Query 161645 TTGATGTTACAACAGGAAACTCCTGATGACTA-TGTGATTGCCACAGGTAAAGAGTATTC 161703 |||||| | ||||| || | || ||||| |||| ||||||| || || || | Sbjct 55772 TTGATGCTCCAACAAGAGAAGCCATCAGACTATTGTG-TTGCCACTGGAGAAAAGCACAA 55830 Query 161704 AGTGAAGGACTTTGTAGAGGCATC---TGCTGAATACTTTGGTATGAAGATTGAGTGG 161758 ||| | || ||||| || ||| ||||| | | |||||| |||| |||| ||| Sbjct 55831 AGTTAGAGAATTTGTTGAAAAATCGTTTGCTG--TTC-TTGGTAAGAAGGTTGAATGG 55885 >seq8 Length=938756 Score = 143 bits (158), Expect = 4e-29 Identities = 434/659 (66%), Gaps = 16/659 (2%) Strand=Plus/Minus Query 161114 TACGGGGATTTGACTGACTCCCTGAACATAGTCTCTATCATT---AAGGAAGTAGAACCT 161170 || || || |||||||| || ||| | | || |||||| ||| | |||| || Sbjct 717902 TATGGTGACTTGACTGATACCGGAAACTTGATTTCCATCATTTCCAAG--ATTAGA-CCA 717846 Query 161171 GATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAA 161230 ||||| ||||||||| | || || || ||||| ||||| ||| || |||||| Sbjct 717845 GATGAAATCTACAACTTGGGTGCTCAATCCCATGTTAAAGTCAGTTTTGAAATGCCTGAA 717786 Query 161231 TATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGT-CTCCT 161289 || || || | ||||| | | || || | | | ||||| || ||||| || | Sbjct 717785 TACACTGCCAATGTTGATGGTATTGGTACTTTGCGTATTTTGGAAGCCATTCGTGCTTGT 717726 Query 161290 AGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGT 161349 | | || | || | | |||| || || || ||||| |||||||| || || Sbjct 717725 GGATTGGAAAAGAAGACTAGAT-TCTATCAAGCTAGTACTAGTGAATTGTATGGTTTAGT 717667 Query 161350 ACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGC 161409 ||||| | ||||| |||||||| || || ||||| ||||| |||||||||| || Sbjct 717666 TCAAGAAATTCCACAAAAAGAAACCACTCCATTCTATCCACGTTCTCCATATGCTTGCGC 717607 Query 161410 TAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAG 161469 || | || | ||||||||||| | ||||| ||||| ||| ||| || Sbjct 717606 CAAGTTGTACAGTTATTGGATTGTTATCAACTATAGAGAAGCTTACAATATGTTTGCTTT 717547 Query 161470 TAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAA 161529 | || ||||| ||||| ||||| || || ||| || || || || | || Sbjct 717546 GAACGGAATTCTTTTCAATCATGAAAGTATTCGTCGTGGTCCAACCTTTGTTACAAGAAA 717487 Query 161530 GATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAA 161589 |||||||| || | | |||||| | ||| | || ||||| | || | ||||| Sbjct 717486 GATTACTATGGCTGTTGCTCGTATTCATCTCGGATTGCAAGATTGCTTGTATTTGGGTAA 717427 Query 161590 TCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGAT 161649 | | | | | |||||||||| |||||| | |||||||| || || ||||||||||| Sbjct 717426 TTTGGATGCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATGTGGTTGAT 717367 Query 161650 GTTACAACAGGAAACTCCTGATGACTA-TGTGATTGCCACAGGTAAAGAGTATTCAGTGA 161708 | | ||||| |||| || | || || |||| ||||||| ||| || | | ||| | Sbjct 717366 GCTCCAACAAGAAAAGCCAGCCGATTATTGTG-TTGCCACTGGTGAAAAACACAAAGTTA 717308 Query 161709 AGGACTTTGT---AGAGGCATCTGCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGT 161764 || ||||| | | ||| ||||| | | | |||| |||| |||| ||| ||||| Sbjct 717307 GAGAATTTGTTGAAAAATCATTTGCTG--TTC-TCGGTAAGAAGGTTGAATGGAAGGGT 717252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729922446689920