Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 277 2e-69 seq9 248 1e-60 seq62 210 3e-49 seq231 188 1e-42 >seq38 Length=381539 Score = 277 bits (306), Expect = 2e-69 Identities = 914/1411 (65%), Gaps = 55/1411 (4%) Strand=Plus/Minus Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||||||||||| | | ||||||| || |||| |||||| || || ||||||||||| Sbjct 296456 GTATATGGTTCGAAACATTCATTGTTGCCCAAGATTTGACTGGTGGAAGCAGTTGGCATT 296397 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 ||||| || || | ||| ||||| | ||| ||| | || || | | | | | || | Sbjct 296396 GGTGCAACTAAGAGACTGTTTCTGACACCGTGTTGCAAGACTTGTTGTCTCAAACCTTCC 296337 Query 68881 CAATCCCA------------AAGA---------TCAGATGGTACAACAT------TCCAA 68913 |||||||| || | || ||||| || | | |||| Sbjct 296336 CAATCCCATCTACCGCTGGTAATAGTCTTACCTTCGAATGGTTCACCTTCTCTGGTCCAG 296277 Query 68914 AGATCGTATTGTAGAATTCCGTTACTTGCATATGA--TCCATTATATGTTTCATAAGGTC 68971 | |||| ||| | || || ||||| || || ||| | ||| |||||||| | || Sbjct 296276 AATTCGTGTTGGAAGATACCCTTACTG--ATTGGACTTCCTTCATAGGTTTCATATGTTC 296219 Query 68972 CTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG-CACCGTAATAAATTGTTTCGAAA 69030 |||| | ||| ||||| || || | ||| || | | ||||| ||||| || Sbjct 296218 CTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGGCAGCAAAGTAAATGGTTTCAAAG 296160 Query 69031 ATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAAT 69090 || | | | ||||| | || |||||| ||| ||||||||| | | | || || Sbjct 296159 ATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGAATGGAAGACGCATCTTGATGAAA 296100 Query 69091 GCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT-TC 69149 ||||| ||||| || ||||| || | ||| || ||||| ||||| | || ||| | Sbjct 296099 GCATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTAA-AGTTACTCTTCTT 296041 Query 69150 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTAC 69209 |||||| | || |||||||| |||| ||||| ||||| | ||| | | Sbjct 296040 GGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAATTGTAAGTGGCAAT 295981 Query 69210 TTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCG---TCCATCTATAACAAACAT 69263 || || || || | || || | |||| | | | | | || | ||| || | Sbjct 295980 CTTGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTCTTCATTGACATACTT 295921 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 || || | | || || ||||| || || || |||| || | | | ||| || Sbjct 295920 TGGAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAAT 295861 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 || || ||||| | ||| | | ||||| || || || ||||| ||||| ||| | Sbjct 295860 AATTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCT 295801 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||||| | |||||||| | || | || |||||||||||| || | ||| ||||| Sbjct 295800 ATTACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAAT 295741 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATAT 69501 || ||| | | ||| || || ||||| | ||| ||| |||||||| Sbjct 295740 AGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCTTGG--CCTTTCCTTCTCTTTCATAT 295683 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 | ||||||| | | |||||| || |||||||||||| | | || || ||||||| Sbjct 295682 TTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTCATTT 295623 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 ||||| | | |||||| | ||||||||||||| |||| ||| || |||||| | | Sbjct 295622 GGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTTGACC 295563 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGA 69681 || | | | | || | |||||| | ||| ||||||| || || ||| ||| | | | Sbjct 295562 CATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCTCAAA 295503 Query 69682 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGT 69741 || | ||| || | ||| ||||| ||||| ||||| | ||| || || | | | ||| | Sbjct 295502 TCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTT 295443 Query 69742 CGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGA 69801 | ||| || || ||||| | ||||||||||||| ||| | ||||||| ||| ||| Sbjct 295442 CTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGGA 295383 Query 69802 ATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTA 69861 || | |||||| ||| | || ||||| || ||| || ||| || | |||||| Sbjct 295382 ATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATTG 295323 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 || || | ||| || || || || || || || || |||||| || | || Sbjct 295322 TGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGTA 295263 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 ||||| ||||| | ||| |||||| |||| || || ||||| | |||||| Sbjct 295262 TCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTGT 295203 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA----ACCATTTTTC 70037 || | ||| || ||||| || ||||| ||||| || ||| | | |||| | | Sbjct 295202 GGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAACATACCACTACTG 295143 Query 70038 AGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCG 70096 || || || || |||| ||| ||| ||| || || || | | || || |||| Sbjct 295142 AGTAA----ATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCG-TGGATACCTAAAC 295088 Query 70097 CGACACGCATCAACATATGCTGAGGTCGTTC 70127 |||||||| ||||| || || |||| ||| Sbjct 295087 TTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 248 bits (274), Expect = 1e-60 Identities = 649/967 (67%), Gaps = 36/967 (4%) Strand=Plus/Minus Query 39266 ATTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT-CTTGT--GACATAACTCCC 39322 ||| ||||||| ||| |||| || ||| ||||||| ||| | ||||| | Sbjct 333263 ATTATTTAAAAATCATCATCCAATCTGAAAACCTTATCTTTCTTATTGGACATTAT---- 333208 Query 39323 ATTTT--TTGG--TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGA 39378 |||| |||| ||||| ||||| ||||| ||||| || || || || | || Sbjct 333207 ATTTGCCTTGGCATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGA 333148 Query 39379 TATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTC 39438 ||| | | ||| |||| || ||||| | || ||||| | |||| | |||| ||| Sbjct 333147 TATGATATTCATCCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCC-AATA- 333090 Query 39439 TGAAATCAA---TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCAT 39495 |||| ||| |||||| ||||| | ||| || ||| || ||| | | || |||||| Sbjct 333089 -GAAACCAACAATCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCAT 333031 Query 39496 TCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTC 39555 ||| || | | |||||||| | || | | ||| || || || || || || || || Sbjct 333030 TCCAATCAAATCAACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTC 332971 Query 39556 TGTTATTATCGATGTTACTACCTCATCAC-----TCGGTGGATGCAATAAATGTTTAA-A 39609 | | || ||||| | | | | ||| || | ||||| || | Sbjct 332970 ATAAACAAGTGAATGAACTACTTGTTGAGGTAATTTAGTGTATT---TCAATGTGGAATA 332914 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 | ||| || ||||| || ||||| || ||||| | | || ||||| ||||| || Sbjct 332913 GAGTAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAA 332854 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 || | |||||||| |||||||| || || | ||| || || | | |||| |||||| Sbjct 332853 TGATAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGA 332794 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGC-AACAAGTCTCTCTCCGTAACTTGTATCAT 39788 ||||| || || || || ||||||||| ||||| ||| || | | | ||| Sbjct 332793 GAAGAAAATTCCCTCCACACATGCAAATGCCAACAA-TCTTTCAGCAAACAAATTCTCAG 332735 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 || ||||| ||| |||||| | ||||||||| | || | || | ||| || || | Sbjct 332734 AATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGG 332675 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTA-TCTTTAA-CATATGTATCTATTAACAGACT 39906 ||| ||| ||| || | |||| || | ||||||| || | || || || | ||| Sbjct 332674 CATGAAATAGACGATTTCTTTC-TCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACT 332617 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||||||| | ||| || |||||||| || || |||||||| || |||||||||||||| Sbjct 332616 ATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTC 332557 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | | ||| || | || ||| || | ||||||||| || ||||||||||| Sbjct 332556 TGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACT 332497 Query 40027 AGCGGCAAAAAATGCCAATACATGT-TTAATAAAATATTTTTCATCGGGTGTCAATTTAT 40085 || ||||| || |||| || ||| || || |||| || ||||| | | | ||| | Sbjct 332496 GGCTGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTT 332438 Query 40086 TCCAGTCATTGATATCTTT-TGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||| ||| | ||||| | ||| | ||| || || || ||||||| || || ||| | Sbjct 332437 CCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATT 332379 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTT 40204 | |||||||||||| | ||| || | | |||| || | |||||| | |||||| | || Sbjct 332378 GTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGA 332319 Query 40205 GGATTTT 40211 ||||||| Sbjct 332318 GGATTTT 332312 >seq62 Length=286411 Score = 210 bits (232), Expect = 3e-49 Identities = 415/604 (69%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 ||| ||||| || ||| |||| || ||||| | |||||||| || || |||| Sbjct 259942 TAAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGC 260001 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 | |||||||| |||||||| || || | |||||| |||| | ||||| ||||| || Sbjct 260002 CAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAA 260061 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG--TAACTTGTATCATTA 39790 ||| || ||||| || ||||| || | | | || | ||| || | ||||| Sbjct 260062 GAAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCT--CATTA 260119 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| ||| |||||| || ||||| | |||| | || | || || || ||| Sbjct 260120 TTGATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCA 260179 Query 39851 TTAAAGAGATAATGTTTTTCATCACT-ATC-TTTAACATATGTATCTATTAACAGACTAT 39908 || || | | |||| |||| || | ||| |||| || | || || || | ||||| Sbjct 260180 TTGAACAAACGATGTCTTTC-TCTTTGATCCTTTATCAAA-GTTTCAATGAGTGTACTAT 260237 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 ||||||| | |||||| |||||||| || || || || ||||| |||||||| ||||| | Sbjct 260238 ACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTG 260297 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 ||||||||||| | |||| || |||||||||||| || || || || | Sbjct 260298 GTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACG 260357 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | ||||| || || || ||| || ||||| | || ||| | |||||||| | ||| Sbjct 260358 CAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCC 260417 Query 40089 AGTCATTGATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 | | | ||||| | ||| | ||| ||||||||||| ||||| || || ||| ||| Sbjct 260418 ATTGTGTAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCC 260476 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 || || ||||| | ||| || | |||||| | || || | ||||| | | |||| Sbjct 260477 TTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGA 260536 Query 40208 TTTT 40211 |||| Sbjct 260537 TTTT 260540 >seq231 Length=8293 Score = 188 bits (208), Expect = 1e-42 Identities = 349/499 (70%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 39718 AAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC-AACAAGTCTCTCTCCGT 39776 |||| |||||| ||||| || || || || ||||||||| ||||| ||| || | Sbjct 1376 AAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAACAA-TCTTTCAGCAA 1318 Query 39777 AACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCA 39836 | | ||| || ||||| ||| |||||| | ||||||||| | || | || | Sbjct 1317 ACAAATTCTCAGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTA 1258 Query 39837 TTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTA-TCTTTAA-CATATGTATC 39894 ||| || || |||| ||| ||| || | |||| || | ||||||| || | || || Sbjct 1257 CTGTATCAATGGCATGAAATAGACGATTTCTTTC-TCTTTGGTCTTTAATCAGA-GTTTC 1200 Query 39895 TATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || | |||||||||||| | ||| || |||||||| || || |||||||| || || Sbjct 1199 AATGAGAGTACTATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAA 1140 Query 39955 ACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCAC 40014 |||||||||||| | | ||| || | || ||| || | ||||||||| || Sbjct 1139 ACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGAC 1080 Query 40015 TATTCCATCACTAGCGGCAAAAAATGCCAATACATGT-TTAATAAAATATTTTTCATCGG 40073 ||||||||||| || ||||| || |||| || ||| || || |||| || ||||| | Sbjct 1079 AATTCCATCACTGGCCGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAG 1021 Query 40074 GTGTCAATTTATTCCAGTCATTGATATCTTT-TGATATATCTACTTCTTCAGCTGTCCAA 40132 | | ||| | ||| ||| | ||||| | ||| | ||| || || || ||||||| Sbjct 1020 AGTTGAGTTTTTCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAG 962 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 || || ||| || |||||||||||| | ||| || | | |||| || | |||||| | | Sbjct 961 AATGAAGCCATTGTCTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGA 902 Query 40193 ACAAATCTATTTGGATTTT 40211 ||||| | || ||||||| Sbjct 901 ACAAAACGATGAGGATTTT 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902068293760