Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq19 89.7 1e-12 seq25 86.0 1e-11 >seq19 Length=467654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 332046 TCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCA 332105 |||||||| |||| ||||||||||||| || ||||||||||||| | | || Sbjct 210778 TCTTTCTCAATATATTTACGATATTCAGTTGGAGTAGTTGCACCAATTAATCTCAATACA 210719 Query 332106 CCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAA 332165 || | || ||| |||||||| ||||||| |||| ||| || || | ||| Sbjct 210718 CCTCTTGCAAGGAGTGGCTTAATCATATTGGAAGCATCCAAAGAGTTATCACCAGTAGAA 210659 Query 332166 CCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTT- 332224 ||||| || || | ||||||||||||||||| | |||| || || | ||||| Sbjct 210658 CCAGCTCCTGACAAGGTGTGAATTTCATCAATGAAGAGAATAACATCACCA-GATTCTTC 210600 Query 332225 TAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGC 332284 | ||| || || | | | | | | ||||||||||||||| | | ||| ||||||| Sbjct 210599 AACTTCCTTAAGGATACTCTTCAATCTTTCTTCAAATTCACCTCTGAATTTACTACCAGC 210540 Query 332285 A 332285 | Sbjct 210539 A 210539 >seq25 Length=747259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/245 (69%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 332044 TATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACACGAATCT 332103 ||||||| || |||| | | ||||||||| | ||||| |||||||| | ||| | Sbjct 403382 TATCTTTTTCAATATATAATCTATATTCATCCAAAGTTGTAGCACCAATACAATGAAGTT 403323 Query 332104 CACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGG 332163 | || | || | ||| || | |||||| ||| || | |||||| | | || Sbjct 403322 CTCCTCTTGCTAAATATGGTTTTAACATATTTGCCATATCAAGAGAACCTTGA---GCAC 403266 Query 332164 AACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTT---TCACGTT 332220 |||||| | || || || ||||||||||||||||| | |||| | | | | | ||| Sbjct 403265 TACCAGCACTTACAATCATGTGAATTTCATCAATGAATAGAATAATTTCTCCCTGATGTT 403206 Query 332221 TCTTTAGTTCTTTTAGCAAATTG--TCGATGCGTTCTTCAAATTCACCACGATACTTAGT 332278 ||| | ||| |||| ||||| | | ||||||||||||||||| | | | ||| | Sbjct 403205 CCTTAACATCTCTTAG--AATTGCCTGTACACGTTCTTCAAATTCACCTCTAAATTTACT 403148 Query 332279 ACCAG 332283 ||||| Sbjct 403147 ACCAG 403143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113819211573632