Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 268 7e-67 seq62 239 4e-58 seq102 205 7e-48 seq231 201 9e-47 seq21 87.8 1e-12 >seq9 Length=695587 Score = 268 bits (296), Expect = 7e-67 Identities = 424/603 (70%), Gaps = 6/603 (1%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| | | ||||| | |||||| |||| |||| | | || ||| ||||||| Sbjct 332310 AGAAAATCCTCATCGTTTTGTTCTCTTTCCACTTCATTATCCTAAAATGTGGGAAATGTA 332369 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT-TTGACTAAAGACTTAG 43802 |||||| || ||| ||||| ||||||| || || |||||| || || | || || Sbjct 332370 CAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTCAC-ACTGATATAA 332428 Query 43803 CACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTT 43862 | | ||| | | || | | ||| ||||||| || || |||| || | Sbjct 332429 CTGAATGGGAAAAACTCAATTCTAATGAACAACATTTCATCAAGACAGTGCTGGCCTTCT 332488 Query 43863 TTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTC 43922 |||| || || || || || |||||||||||| | | | || | | |||||| Sbjct 332489 TTGCAGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTCATGGCACAAGTTC 332548 Query 43923 AATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGG 43982 || ||||||||||| ||||||| ||||| |||||||||||||| |||||||||||| | | Sbjct 332549 AAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATTGAAAATATTCATGCTG 332608 Query 43983 AAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA--TCGATT 44040 ||||||| ||| ||| || || || || ||||| | ||||| | ||| | Sbjct 332609 AAATGTATAGTACTCTCATTGAAACTCTGATTAAAGACCA--AAGAGAAAGAAATCGTCT 332666 Query 44041 GTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 ||| |||| || || |||||||| | || || | ||||| ||||||| | ||||| Sbjct 332667 ATTTCATGCCATTGATACAGTACCATCAGTTCAAAAGAAAGCTAACTGGGCATTGAAATG 332726 Query 44101 GATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 ||| ||||| | ||| |||| ||| || | | || |||||| |||||| || || Sbjct 332727 GATTAATTCTGAGAATTTGTTTGCTGAAAGATTGTTGGCATTTGCATGTGTGGAGGGAAT 332786 Query 44161 TTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220 |||||| || ||| ||| | || || |||||||||||||| ||| |||||||||| Sbjct 332787 TTTCTTCTCTGGAAGTTTTTGTTCAATTTTCTGGTTAAAGAAACGTGGTCTGATGCCTGG 332846 Query 44221 GTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || | || || ||||| || ||| |||||||||||| |||||| ||||| || || Sbjct 332847 TTTATCATTCTCTAATGAATTGATATCTCGTGATGAAGGGTTACATACAGATTTCGCATG 332906 Query 44281 CTT 44283 || Sbjct 332907 TTT 332909 >seq62 Length=286411 Score = 239 bits (264), Expect = 4e-58 Identities = 413/594 (70%), Gaps = 12/594 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || | |||||| | || ||| ||||||| || || || ||| Sbjct 260526 TTTGTCTTATTCCCTCTCGAATATCCAAAGATTTGGGAAATGTATAAGAAGGCCATGGCA 260467 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGAT-TTGACTAAAGACTTAGCACATTGGATTGCATT 43818 || || ||||| || |||||||||||| || || | || | |||| |||| | || Sbjct 260466 TCCTTCTGGACTGCTGAAGAAGTTGATCTTCAC-ACTGATATTACACAATGGACCACCTT 260408 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | |||| | ||| |||| ||||| ||||| || || ||||||||| |||||| Sbjct 260407 GACACCAAACGAACAACACTTTATCAAGAGTGTTTTAGCTTTCTTTGCTGCGTCCGACGG 260348 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || ||||||||||||||| | ||| | || || ||| |||||||||| | Sbjct 260347 TATTGTCAATGAAAATTTGTGCCAACAATTTATGGCTGAGGTACAAATACCAGAAGCGAG 260288 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 |||||| || || || |||||||| || |||||||| ||| | |||||||| ||| || Sbjct 260287 ATGTTTCTACGGTTTCCAAATTGCTATTGAAAATATCCATGCTGAAATGTATAGTACACT 260228 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAG--CATCGATTGTTTAATGCGATAGAA 44056 || || || | || || ||| | ||||| ||||| ||||| ||||| || || Sbjct 260227 CATTGAAACTTTGATAAAGGATCA--AAGAGAAAGACATCGTTTGTTCAATGCCATTGAT 260170 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA- 44115 || || || | | || | || ||| ||||| | |||||||| ||| ||||| Sbjct 260169 ACTGTTCCATCTGTACAAAAGAAGGCACGTTGGGCTATGAAATGGATCAAT---AATGAG 260113 Query 44116 --TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 || |||| ||||| | | || ||||| ||| ||||| |||||||| || || Sbjct 260112 AATTTATTTGCCGAACGTTTATTGGCCTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGT 260053 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || || |||| |||||||| |||||||| ||| | |||||||| ||| | || || Sbjct 260052 TCTTTCTGTTCCATTTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGTTTGGCATTCTCC 259993 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 ||||| ||||| ||||||||||| ||||| |||||||| || || ||| Sbjct 259992 AATGAATTAATCTCCCGTGATGAAGGATTACACACTGATTTTGCCTGTTTATTA 259939 >seq102 Length=34929 Score = 205 bits (226), Expect = 7e-48 Identities = 434/646 (67%), Gaps = 9/646 (1%) Strand=Plus/Plus Query 40649 TTCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCAG---TTTCCGTTGCTAAC 40705 ||| | |||||||| ||||| | ||| ||||||||| | ||||| || |||| Sbjct 31951 TTCTAAATTTGGATATCAAATGAAATATTCATTGAGAAATAATGTATTTCCATTATTAAC 32010 Query 40706 TACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTG 40765 || |||| | | ||||||||||| |||| ||||| | || ||||| || || | Sbjct 32011 AACTAAAAGAGTATTTTGGAAAGGTGTTGCTAAAGAATTATTTTGGTTCATTTCTGGAAG 32070 Query 40766 TACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAA 40825 ||| |||||||| | ||||| ||| || | || |||||| ||| | | || | Sbjct 32071 TACAAATGCTAAAATTTTATCTGAACAAGATATTCATATTTGGGATGGAAATGGATCGAG 32130 Query 40826 AACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTA 40885 | |||||| | | ||||| | || | || || ||| | ||||||||||| Sbjct 32131 AGAATATTTAGATTCATTGGGATTTGAGAATCGTGAAGAGATGGATTTGGGTCCTGTTTA 32190 Query 40886 TGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAA 40945 ||| ||||| | | |||||| || |||||| | |||| | | |||||||| || Sbjct 32191 TGGTTTTCAATGGAGACATTGGGGTAGTTCATATGAAAATATGCATACAGATTATACAAA 32250 Query 40946 TAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCG 41005 ||| ||| | |||||||| || ||| || || | || |||| || | Sbjct 32251 TAAGGGAGTTGATCAATTGAAGAAATGTATTGAAACTTTAAAGAATAATCCAACTAATAG 32310 Query 41006 ACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTG 41065 |||||| ||||| | || ||||| | | || ||| | |||||||| |||||||| Sbjct 32311 ACGTATTATATTATCTGCATGGAATGTATCAGATTTACCTAATATGGCATTACCACCTTG 32370 Query 41066 TCATTTGTTATGTCAGTTTTACGT--TTGC----AATGGTGAACTGTCATGTCAATTGTA 41119 |||||| | ||||| |||| || | | | | |||| | |||||| |||| Sbjct 32371 TCATTTAATGTGTCAATTTTGGGTAGATACAGATACTAATGAATTAAGTTGTCAAATGTA 32430 Query 41120 TCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCT 41179 |||||||||| |||| |||||| |||| || || ||||| || || |||||| | | Sbjct 32431 TCAAAGATCATGTGATATGGGATTAGGTGTTCCATTTAATATTGCATCATATGCTTTATT 32490 Query 41180 CACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGG 41239 || | || ||||| ||| ||||||||||||||||| ||| |||| || || || Sbjct 32491 AACAAGATTAATGGCACAAGTTTGTAATTTAAAACCTGGTGATTTTATTCATACATTGGG 32550 Query 41240 AGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAA 41285 ||| |||| |||| | ||||| || || || || | | ||||| Sbjct 32551 TGATACACATGTTTATAAGAATCATATTGAACCTTTGAAAAAACAA 32596 >seq231 Length=8293 Score = 201 bits (222), Expect = 9e-47 Identities = 343/493 (70%), Gaps = 6/493 (1%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| | | ||||| | |||||| |||| |||| | | || ||| ||||||| Sbjct 881 AGAAAATCCTCATCGTTTTGTTCTCTTTCCACTTCATTATCCTAAAATGTGGGAAATGTA 940 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT-TTGACTAAAGACTTAG 43802 |||||| || ||| ||||| ||||||| || || |||||| || || | || || Sbjct 941 CAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTCAC-ACTGATATAA 999 Query 43803 CACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTT 43862 | | ||| | | || | | ||| ||||||| || || |||| || | Sbjct 1000 CTGAATGGGAAAAACTCAACTCTAATGAACAACATTTCATCAAGACAGTGCTGGCCTTCT 1059 Query 43863 TTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTC 43922 |||| || || || || || |||||||||||| | | | || | | |||||| Sbjct 1060 TTGCGGCCAGTGATGGAATTGTCAATGAAAATCTATGTCAACAATTCATGGCACAAGTTC 1119 Query 43923 AATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGG 43982 || ||||||||||| ||||||| ||||| |||||||||||||| |||||||||||| | | Sbjct 1120 AAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATTGAAAATATTCATGCTG 1179 Query 43983 AAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA--GCATCGATT 44040 ||||||| ||| ||| || || || || ||||| | ||||| |||| | Sbjct 1180 AAATGTATAGTACTCTCATTGAAACTCTGATTAAAGA--CCAAAGAGAAAGAAATCGTCT 1237 Query 44041 GTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 ||| |||| || || |||||||| | || || | ||||| ||||||| | ||||| Sbjct 1238 ATTTCATGCCATTGATACAGTACCATCAGTTCAAAAGAAAGCTAACTGGGCATTGAAATG 1297 Query 44101 GATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCAT 44160 ||| ||||| | ||| |||| ||| || | | || |||||| |||||| || || Sbjct 1298 GATTAATTCTGAGAATTTGTTTGCTGAAAGATTGTTGGCATTTGCATGTGTGGAGGGAAT 1357 Query 44161 TTTCTTTTCAGGA 44173 |||||| || ||| Sbjct 1358 TTTCTTCTCTGGA 1370 >seq21 Length=820293 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 115035 GTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTCGGCT 115094 ||||||||||| |||||| |||| ||||| ||||||| ||||| || || | | Sbjct 816570 GTCATACGTGATGGAAAACCATGAGGATTCATAATCATATCTGGACATATACCTTGTTCA 816511 Query 115095 GTGAACGGCATGTCGTGCTGATCGTACA-TCATTCCACAAGTTCCTTTTTGAGCGGTAAA 115153 | || ||||| || || ||||| |||| | | |||||| |||||||||| || | Sbjct 816510 TTAAATGGCATATCTTGTTGATC-TACAATTAATCCACATACTCCTTTTTGACCGTGACG 816452 Query 115154 CGATGCAAATTTATCACCAATCTCAGGTTCTCTGATTTTTCT 115195 |||| |||||||||||| | |||||| ||| ||| ||| Sbjct 816451 TGATGAAAATTTATCACCCAATTCAGGTCTTCTTGTTTGTCT 816410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452202307920