Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq62 158 2e-33 seq38 154 2e-32 seq9 120 4e-22 seq17 91.5 2e-13 seq66 89.7 6e-13 seq8 86.0 8e-12 >seq62 Length=286411 Score = 158 bits (174), Expect = 2e-33 Identities = 386/577 (67%), Gaps = 11/577 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| | || ||||| ||||| || | |||||| ||||| | ||| Sbjct 259948 GGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACC 260007 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| || |||||||||||| |||| | ||||| || || |||||||| || Sbjct 260008 AGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAAT 260067 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 ||| || ||||| ||||| || || | |||||||| || | | || || | Sbjct 260068 ACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAA---ATTCTCATTATTGAT 260124 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||||||||| ||||| |||||||| | | | |||| ||||| | ||||| | || Sbjct 260125 CCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAA 260184 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 || | | |||| | |||||| || | | ||||| | | | ||| |||| Sbjct 260185 CAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTC 260244 Query 122958 GCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 |||| | ||||| || ||| ||| | ||||||| | | |||||| ||| Sbjct 260245 AGCATGGATATTTTCA--ATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATT 260302 Query 123016 TGAACCTCATCCGCAAAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 || |||||| || |||||||| | ||| ||| ||||| || |||||| |||| Sbjct 260303 TGTACCTCAGCC-ATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGC 260361 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTC 123134 |||||| || | | ||| || || | | ||| ||| ||| ||| |||| | Sbjct 260362 AAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCCATTG 260421 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTT 123193 || ||| || | |||||||||||| |||||||| | | | || ||||| | Sbjct 260422 TGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG-GCCTTCT 260480 Query 123194 TATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAA 123230 |||| | |||||| | | |||||| | || ||||| Sbjct 260481 TATACATTTCCCAAATCTTTGGATATTCGAGAGGGAA 260517 >seq38 Length=381539 Score = 154 bits (170), Expect = 2e-32 Identities = 610/954 (64%), Gaps = 13/954 (1%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || | |||||||||||| | |||||| |||||||||| | ||| ||| | Sbjct 296098 CATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTAAAGTTACTCTTCTTGG 296039 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 | || || || ||| |||| | ||||| | || | ||| | || |||||| Sbjct 296038 CTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAATTGTAAGTGGCAATCT 295979 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTG 111230 | | ||| | | |||| | |||| | || |||| ||||||||||||||||||| Sbjct 295978 TGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTG 295919 Query 111231 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 111290 |||| || || || | || || ||||| ||||| | | || | || | || Sbjct 295918 GAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAA 295859 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 |||| ||||| ||||| ||| ||| || || || | || | ||| || || | | Sbjct 295858 TTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTAT 295799 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAG 111410 | || | ||||||||| | |||||| || || || || | || | || | ||||| Sbjct 295798 TACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAG 295739 Query 111411 CCTTCCAAACATCG-GCGGCTGGTACAATGGCG---TTGGCCCGTCCCTCCGCCTCGTAC 111466 | ||| | || | | || | |||| |||||| ||| || || || Sbjct 295738 CAAACCAGAGTTCTTGAGCCTTG----ATGGTTCTCTTGGCCTTTCCTTCTCTTTCATAT 295683 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 || || || | | || || |||||| | || | |||||| | || | | | Sbjct 295682 TTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTCATTT 295623 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 |||||||| || ||||||| || | |||| ||| || | |||||| || || | | Sbjct 295622 GGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTTGACC 295563 Query 111587 CACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 || | | || | ||||||| | | || ||||| | ||| || || || || Sbjct 295562 CATAAACCCAAGAATAAATCTCTAGCTCTGATT-TCTTCCTTACCGTGATTCTTTCTCAA 295504 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || | || || | || || | |||||| || || | ||| | || | | ||||| Sbjct 295503 ATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTT 295444 Query 111706 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || || ||| |||||| ||||| | || ||| | || || || | | |||||| Sbjct 295443 TCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGG 295384 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 ||| | ||||| |||| || ||||| || | ||| ||| | ||||| | || Sbjct 295383 AATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATT 295324 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 || | || |||||||| ||||| |||| || || | ||||| | |||| || Sbjct 295323 GTGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGT 295264 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 |||| ||||| | || || || ||||| | | | ||||| ||| ||| || Sbjct 295263 ATCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTG 295204 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || |||| |||||||||||||| | ||||| | || ||||| |||||||| Sbjct 295203 TGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAACATACC 295150 Score = 109 bits (120), Expect = 7e-19 Identities = 292/440 (66%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 110368 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTT 110427 ||||||||| || ||||| | || | ||| || || | ||||||||| | ||| Sbjct 296808 ATAGTACATACCAGTCTTCAACCCCTTAGACCAAGCATAAAAGTGCATAGAACTCATCTT 296749 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 ||| | | |||| || ||||| | ||||| | |||| ||| |||||||| | Sbjct 296748 GGAAACTGATGGAATTGAAATGAAAACGTTCAAAGATTGAGATTGATCAATGAATGGAGA 296689 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTAATTTCCCAAACTGTGCGATAG 110545 | || || | ||| | ||| |||| | ||||||||||||||| || || Sbjct 296688 TCTTTCAATGGCAAGATCCA--ACAAGCTTCTTTGCTTAATTTCCCAAACAGTCTTGTAC 296631 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | | ||| |||||||| |||||| || |||||| ||||||||||| | || | Sbjct 296630 AATTCCTTAATATCATCAGGGATACCTTGGATATTTTGGATGGAACCTCTA---TTACCA 296574 Query 110606 ATGAGATCCTTCATA-TCCTTGGA--CCAGAGACCAATCTTCTTGAGGTCATTGACGAGG 110662 || | | || | | | ||||| ||| | ||||||| | | ||| || || Sbjct 296573 ATAATTTGGTTAACAATAGTTGGATTCCACATGTCAATCTTGATCAAATCAGCAACAAGA 296514 Query 110663 TGCTTGTTGACAATGAC---AAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTT 110719 || |||| |||||| | | ||||| | | ||| || | ||||| | Sbjct 296513 TGTCTGTT---AATGACTGGATATTCACCACTCAAAACACGTCTAGTATAAACGTTTGAT 296457 Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 || |||||||| || |||||||| || ||||||||||| |||||| || ||||||||| Sbjct 296456 GTATATGGTTCGAAACATTCATTGTTGCCCAAGATTTGACTGGTGGAAGCAGTTGGCATT 296397 Query 110780 GGTGCCATCAAAAGACTGTT 110799 ||||| | || |||||||| Sbjct 296396 GGTGCAACTAAGAGACTGTT 296377 >seq9 Length=695587 Score = 120 bits (132), Expect = 4e-22 Identities = 371/563 (66%), Gaps = 17/563 (3%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || ||||| || || || | |||||| ||||| ||| ||| ||||| ||||| || ||| Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || ||||| |||| | || || || |||||||| || ||||||||||| ||||| Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || || | | ||| || || | | || | || || |||||||| |||||| || Sbjct 332765 GCCAACAATCTTTCAGCAAACAA---ATTCTCAGAATTAATCCATTTCAATGCCCAGTTA 332709 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 122916 || ||||| | || ||||||| || | ||||| | ||||| | || |||| | Sbjct 332708 GCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTT 332649 Query 122917 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCATTA 122976 || ||||| | ||||| | | ||| |||| |||||| ||||| | Sbjct 332648 TGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCA--A 332591 Query 122977 TGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAAT 123034 ||||| |||| || | ||||| | | ||||| || |||| || | | ||| Sbjct 332590 TGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAA-CTTGTGCCATGAAT 332532 Query 123035 TGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGA-TGTA 123092 |||| | | ||| ||| ||||||||||| | |||||||| ||||| | ||| Sbjct 332531 TGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAGCACTGT- 332473 Query 123093 CTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAA 123152 ||| ||||| | | |||||| ||| || | | ||| || | ||| || | Sbjct 332472 CTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTTATATCAGTGTGAAG 332413 Query 123153 ATCAACTTCTTCCGCAGTCCA-ATTG--CTCATTTGAGCCTTTTTATAGAGTTCCCAGAG 123209 |||||| || ||| | ||||| | || |||| | |||||| || | |||||| | Sbjct 332412 ATCAACCTCCTCCACTGTCCAGAATGAAGCCATT---GTCTTTTTGTACATTTCCCACAT 332356 Query 123210 TTGTGGATACTTCAGGGGGAAGA 123232 || ||||| | || || |||| Sbjct 332355 TTTAGGATAATGAAGTGGAAAGA 332333 >seq17 Length=507294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 232/348 (67%), Gaps = 20/348 (6%) Strand=Plus/Plus Query 11519 ACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTT 11575 |||||| || | | ||| ||| || |||||||| || || |||||||| | || Sbjct 228371 ACAATGACATTTTGATTTTCATTGAAACCATCCATTTCAACAAGCAATTGATTGAGAGTA 228430 Query 11576 TGTTCTCTCTCATCATTTGCTGGCATACCACCAG-CACTGCGTTGCTT----GCCCACC- 11629 | |||||| |||||||| | ||||||| || || ||| | | | | ||| Sbjct 228431 TTTTCTCTTTCATCATTACC------ACCACCATACATTGAGTTACCTCTTGGTCTACCA 228484 Query 11630 ---GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 |||||||| ||||| || |||| ||| | | |||| | ||| | | ||| Sbjct 228485 ATAGCATCAATTTCATCGATAAAGATAATGGCTTCACCAGTTTCTCTGGCCTTCTTGAAG 228544 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 |||| ||||| || | ||| |||||||||||||| || ||||||| | |||| Sbjct 228545 AGATTACGAACTCTAGCAGGACCAACACCAACAAACATTTCAACAAAGTCAGAACCAGA- 228603 Query 11747 CACTGGAT-GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 || || |||||| ||||| ||||| || || | ||| || | | ||||| || Sbjct 228604 CATGCTATAGAATGGAACATTGGATTCTCCAGCTACAGCTTTAGCCAATAAAGTCTTACC 228663 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||||||| |||| | || ||| |||| || ||||||||||| Sbjct 228664 TGTACCTGGTGGACCCATCAAAATGGCACCTCTTGGAATCTTGGCACC 228711 >seq66 Length=243952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 9429 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 9488 |||||||| | | || || ||||||||||| || || ||||| |||||| |||||||| Sbjct 115890 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGGCATGCCAAGGATTATGTTAAAGCTATG 115949 Query 9489 TGGCTCATGCTTCAACAAGAGGAAGCC-GACGAATA-TGTAGTAGCAACGGGTGAGA 9543 ||| | |||||||||||||| ||||| | ||| || ||| || || || ||||||| Sbjct 115950 TGGTTGATGCTTCAACAAGA-AAAGCCAGCCGATTACTGT-GTTGCCACTGGTGAGA 116004 Score = 82.4 bits (90), Expect = 1e-10 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 9429 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 9488 |||||||| | | || || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct 55709 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGCCACGCAAAGGATTACGTTGAGGCTATG 55768 Query 9489 TGGCTCATGCTTCAACAAGAGGAAGCC 9515 ||| | ||||| |||||||| |||||| Sbjct 55769 TGGTTGATGCTCCAACAAGA-GAAGCC 55794 >seq8 Length=938756 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 9429 TTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 9488 |||||||| | | || || ||||||||||| || || ||||||||||||||||| ||| Sbjct 717434 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATG 717375 Query 9489 TGGCTCATGCTTCAACAAGAGGAAGCC-GACGAATATGTAGTAGCAACGGGTGA 9541 ||| | ||||| |||||||| ||||| | ||| ||| || || || ||||| Sbjct 717374 TGGTTGATGCTCCAACAAGA-AAAGCCAGCCGATTATTGTGTTGCCACTGGTGA 717322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025845286400