Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq38 244 1e-59 seq62 147 3e-30 seq9 104 3e-17 seq8 86.0 8e-12 >seq38 Length=381539 Score = 244 bits (270), Expect = 1e-59 Identities = 624/949 (66%), Gaps = 3/949 (0%) Strand=Plus/Minus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| || | |||||| |||||||| |||||||| | ||||| | ||| |||| | Sbjct 296098 CATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCTAAAGTTACTCTTCTTGG 296039 Query 118585 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 118644 | || || || ||| ||||| |||| |||| | |||| | ||| | ||| ||| || Sbjct 296038 CTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAAATTGTAAGTGGCAATCT 295979 Query 118645 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAG 118704 | | ||| | | ||||| || |||| | | |||| ||||||||||||||||| | Sbjct 295978 TGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTG 295919 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 |||| || || || || ||||| |||| ||||| | |||| | || |||| Sbjct 295918 GAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAA 295859 Query 118765 TTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824 |||| || |||||||| ||| ||| ||||| || | ||| | |||||| || ||| | | Sbjct 295858 TTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTAT 295799 Query 118825 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 118884 |||| | ||||||||| | ||||||||| || || || |||||| | | ||||| Sbjct 295798 TACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAG 295739 Query 118885 CCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTG 118944 | ||||| || ||| | || ||||| || ||| || || || | Sbjct 295738 CAAACCAGAGTTCTTGAGCCTTGATGGTTCTCTTGGCCTTTCCTTCTCTTTCATATTTGG 295679 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 119004 | || | | || ||||||||| | || | || ||| | || | || ||| | Sbjct 295678 TATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGACCTTGAGCTTCATTTGGAC 295619 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 ||||||| ||||||| || | |||| ||| || | ||||||||| || || ||| | Sbjct 295618 AGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGAAGAGATCGTTGACCCATA 295559 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 || |||| | ||| | | | |||||| | || ||||| | ||| |||| Sbjct 295558 AACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTCTTTCTCAAATCCA 295499 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC--- 119181 ||||||| | || || | |||||| ||||||| || | || | | ||||| | Sbjct 295498 AAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTTCTCT 295439 Query 119182 GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 || |||| | || | ||||| || |||||| | || || || | | ||||||||| | Sbjct 295438 TACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAACTCTCAACATTGGAATTA 295379 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGA 119301 ||||| ||| || ||||| || | ||| || | ||||| | || ||| | Sbjct 295378 AACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAGAAGCTCTAATATTGTGAA 295319 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 || ||||||||| || || |||| || || | || || | | || | | | Sbjct 295318 CTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGTATCAT 295259 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 | || |||| || || ||| |||| | | | |||||| || |||||| || Sbjct 295258 AAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAACAAGAACTCATTTGTGGAA 295199 Query 119422 TGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC 119470 | || |||||||| ||||| | ||||| | || || || |||||||| Sbjct 295198 TTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAAACATACC 295150 >seq62 Length=286411 Score = 147 bits (162), Expect = 3e-30 Identities = 388/580 (67%), Gaps = 17/580 (3%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | || || ||||||||||| | |||||| ||||| || ||| Sbjct 259948 GGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACC 260007 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| || ||||||||||| ||||| | ||| || || ||||||||||| || Sbjct 260008 AGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAAT 260067 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 || || ||||| || || || || | ||| || ||||| | || ||| | Sbjct 260068 ACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAA---ATTCTCATTATTGAT 260124 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 ||| ||||| ||||| | ||||| || | | | | || || || | || || | || Sbjct 260125 CCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAA 260184 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314 | | ||||| | |||| || || | | || |||||| | ||| |||| Sbjct 260185 CAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTC 260244 Query 130315 GCCATGGACCATTTCATTATGGCACT---GATACGCGTAGAAAGAGCGCGCTTCGCTTAT 130371 |||||| ||||| || ||| | || || |||||||| | | |||||| ||| Sbjct 260245 AGCATGGATATTTTCA--ATAGCAATTTGGAAAC-CGTAGAAACATCTCGCTTCTGGTAT 260301 Query 130372 CTGTACCTCATCTGCA-AAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCA 130429 ||||||||| | || |||||||| | ||| ||| ||||| || |||||| || Sbjct 260302 TTGTACCTCAGC--CATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCA 260359 Query 130430 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT-TCAGGGTCTTCCA 130488 ||||| || || | | | ||| || || | ||||| || | || ||| ||| |||| Sbjct 260360 GCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTT-TGGTGTCAAGGTGGTCCA 260418 Query 130489 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCT 130547 | || ||| | ||||| || || || |||||||| | | | || |||| Sbjct 260419 TTGTGTAATATCAGTGTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATG-GCCT 260477 Query 130548 TCTTATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 130587 ||||||| | |||||| | | ||||| | || ||||| Sbjct 260478 TCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAA 260517 >seq9 Length=695587 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || || ||||| || || | |||||| ||||| | | ||| ||||| ||||| || ||| Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || ||||||||||| | |||||| ||||||||||| || ||||||||||| || || Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 130154 GCAAAGAGACGCTCAGCAAA 130173 || || | | |||||||| Sbjct 332765 GCCAACAATCTTTCAGCAAA 332746 >seq8 Length=938756 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 12084 GCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAA 12143 || || || || ||||||||||| |||||||||||||||||||||||| | | || ||| Sbjct 717419 GCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATGTGGTTGATGCTCCAA 717360 Query 12144 CAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 12203 |||||| || | | ||| ||| || || || || || | |||| || || || || Sbjct 717359 CAAGAAAAGCCAGCCGATTATTGTGTTGCCACTGGTGAAAAACACAAAGTTAGAGAATTT 717300 Query 12204 GTTGA 12208 ||||| Sbjct 717299 GTTGA 717295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429139335040