Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq38 179 4e-40 seq62 140 4e-28 seq9 105 8e-18 seq66 84.2 3e-11 seq8 82.4 9e-11 >seq38 Length=381539 Score = 179 bits (198), Expect = 4e-40 Identities = 1056/1675 (63%), Gaps = 64/1675 (4%) Strand=Plus/Plus Query 104309 GGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATG 104368 |||||||| ||||| || | ||||| | |||||||||||||| |||| || |||||| Sbjct 295150 GGTATGTTTATTCATGCCTCTCCAACATTGTTCAATGCTGGTACTCCAATTCCACAAATG 295209 Query 104369 TCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTT 104428 ||| ||||| | | | ||||| || || || | ||||| |||| || ||| Sbjct 295210 AGTTCTTGTTTCCTCGTTTCTATGAAGGATGATTCCATTCATGGTATTTATGATACCCTT 295269 Query 104429 ACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTG 104488 | | ||||| | || || |||| ||||| |||||||| || | || || | Sbjct 295270 AAGACTTGTGCCCTTATTTCCAAGTCTGCTGGTGGTATTGGTTTGTCAGTTCACAATATT 295329 Query 104489 AGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATG 104548 ||||| | ||| ||| | || ||||| || |||| ||||| | ||||||||| Sbjct 295330 AGAGCTTCTGGATCATACATTAGAGGTACAAACGGAACATCAAATGGTTTAATTCCAATG 295389 Query 104549 CTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGA 104605 | | || || || | ||| || | ||||| |||||| ||| || ||||||| Sbjct 295390 TTGAGAGTTTTCAATGACACTGCCAGATATGTCGATCAAGGTGGTGGTAAGAGAAAGGGT 295449 Query 104606 TCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGT 104665 | | || | ||| | || || |||||| | || || | || || | || ||| | Sbjct 295450 GCCTTTGCCATTTATTTGGAACCTTGGCACTCTGACATTTTTGACTTTTTGGATTTGAGA 295509 Query 104666 CTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCC 104724 || || ||| | || || | | || | ||| | |||| | | | ||| | Sbjct 295510 AAGAATCACGGTAAGGAAGAAAT-CAGAGCTAGAGATTTATTCTTGGGTTTATGGGTCAA 295568 Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784 |||||||||||| | | ||| |||| || | | ||||| ||||| |||||| | | Sbjct 295569 CGATCTCTTCATGCAACGTGTTAAGGATGATGCCGAATGGTCACTCTTCTGTCCAAATGA 295628 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTT-TACACAAAGTACG 104843 || | ||||| | |||| |||||| || || || | || || || || || | Sbjct 295629 AGCTCAAGGTCTTGCTGATGTTTGGGGTGAAGAATTC-AATCAATTATATACCAAATATG 295687 Query 104844 AGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCA 104903 | |||||| ||| | || | ||| || | ||| |||||| | Sbjct 295688 AAAGAGAAGGAAAGGCCAAGAGAACCATCAAGGCTCAAGAACTCTGGTTTGCTATTATTG 295747 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 | | |||| || |||||| ||||||||| | ||||| || | ||||| ||| Sbjct 295748 AAGCCCAAATTGAAACTGGTGTCCCATACATGTTGTACAAGGATTCTTGTAATAGAAAAT 295807 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 |||||| | || | ||| |||||| ||| || | ||||| ||||| | |||| Sbjct 295808 CCAATCAACAAAACCTTGGTACCATCAAGTCTTCTAACTTGTGTACTGAAATTATTGAAT 295867 Query 105024 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATG 105083 |||| | ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 295868 TTACTGCTCCTGATGAAGTTGCTGTATGTAACCTTGCCAGTATTGCTCTTCCAAAGTATG 295927 Query 105084 TGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA 105143 | || ||| || | || | |||| | |||| | |||||||| || | || || Sbjct 295928 TCAATGAAGAAACTCAAACCTATGATCACCAAAAGTTATACGAAGTTGTCAAGATTGCCA 295987 Query 105144 CCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAAT 105203 | | || | || | ||||||||| |||| |||||| || || || || Sbjct 295988 CTTACAATTTGAATAAGATTATTGATAAGAATTATTACCCAGTCGAAGAAGCCAAGAAGA 296047 Query 105204 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTC 105263 ||| | |||||| | |||||||||||||||||||| ||| | || |||| ||||| Sbjct 296048 GTAACTTTAGACACAGACCAATTGGTCTCGGTGTTCAAGGTTTGGCCGATGCTTTCATCA 296107 Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 || | |||| || || ||||| || | |||| | || ||||| | Sbjct 296108 AGATGCGTCTTCCATTCGAAAGTGAAGAAGCTAAAAACCTCAACAGGGAAATCTTTGAAA 296167 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380 |||| || || || | ||| | | ||| || | || ||||||| || ||| Sbjct 296168 CCATTTACTTTGCTGC-CATGA--CCTGCTCAATGGAACTTGCTAAGGTTGAAGGAACAT 296224 Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGG-- 105436 ||||||||| ||| || |||| ||| ||||| ||| ||| || | ||| Sbjct 296225 ATGAAACCTATGAAGGAAGTCCA--ATCAGTAAGGGTATCTTCCAACACGAATTCTGGAC 296282 Query 105437 ----GAAGGTGAGACC-----AAGCT-------TCAC----------TACGACTGGGAAG 105470 |||||||| ||| ||| | | || | || ||||||| Sbjct 296283 CAGAGAAGGTGA-ACCATTCGAAGGTAAGACTATTACCAGCGGTAGATGGGATTGGGAAG 296341 Query 105471 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGC 105530 | | | ||| || | | | ||| | | ||||||||| | | || ||||||| Sbjct 296342 GTTTGAGACAACAAGTCTTGCAACACGGTGTCAGAAACAGTCTCTTAGTTGCACCAATGC 296401 Query 105531 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 105590 |||| || |||||| ||||||||||| || |||||||| || ||||| || || | | Sbjct 296402 CAACTGCTTCCACCAGTCAAATCTTGGGCAACAATGAATGTTTCGAACCATATACATCAA 296461 Query 105591 ACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT---GTGATTGTCAACAAGCATCTCG 105647 || | ||| ||| | | || || | | || ||| |||| ||||| | Sbjct 296462 ACGTTTATACTAGACGTGTTTTGAGTGGTGAATATCCAGTCATT---AACAGACATCTTG 296518 Query 105648 TGGATGACCTCAAAGAGATTGGTCTCTGG--TCCAAGGA-TATGAAGGATCTCA-TGGTG 105703 | | ||| | | |||||| | ||| ||||| | | | || | | | |||| Sbjct 296519 TTGCTGATTTGATCAAGATTGACATGTGGAATCCAACTATTGTTAACCAAATTATTGGTA 296578 Query 105704 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTAC 105763 | | | |||||||| |||||||| | ||| || |||| |||||| | |||||| Sbjct 296579 ATA----GAGGTTCCATCCAAAATATCCAAGGTATCCCTGATGATATTAAGGAATTGTAC 296634 Query 105764 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || ||||||||||| ||| | |||| ||| | || | ||| || | || Sbjct 296635 AAGACTGTTTGGGAAATTAAGCAAAGAAGCTTGT--TGGATCTTGCCATTGAAAGATCTC 296692 Query 105822 GCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGC 105881 |||||||||||| |||| | |||| | ||||| || |||| | | |||||| Sbjct 296693 CATTCATTGATCAATCTCAATCTTTGAACGTTTTCATTTCAATTCCATCAGTTTCCAAGA 296752 Query 105882 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 105936 | |||||||||| | || |||| ||||| | || || || ||||| || Sbjct 296753 TGAGTTCTATGCACTTTTATGCTTGGTCTAAGGGGTTGAAGACTGGTATGTACTA 296807 >seq62 Length=286411 Score = 140 bits (154), Expect = 4e-28 Identities = 388/580 (67%), Gaps = 19/580 (3%) Strand=Plus/Minus Query 94384 TTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAAT-TG 94442 ||||| || | |||||| | | |||||| | ||||||||||| || | | || Sbjct 260517 TTCCCTCTCGAATATCCAAAGATTTGGGAAATGTATAAGAAGGC-CATGGCATCCTTCTG 260459 Query 94443 GACTGCTGAAGAGGTAGATCTCTCAAAG-GAT-TTGGACGATTGGAAGACTCTAAATGAA 94500 |||||||||||| || ||||| ||| | ||| || || || ||| || | | | Sbjct 260458 GACTGCTGAAGAAGTTGATCT-TCACACTGATATTACACAAT-GGACCACCTTGACACCA 260401 Query 94501 AATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTT 94560 || ||| | | || || || | | || |||||||||| ||||| || ||||| Sbjct 260400 AACGAACAACACTTTATCAAGAGTGTTTTAGCTTTCTTTGCTGCGTCCGACGGTATTGTC 260341 Query 94561 TTTGAGAATATCAAT-AACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTT 94619 ||| ||| | ||||| ||| | |||||| ||| | |||||||||| || Sbjct 260340 AATGAAAATTTGTGCCAACAA-TTTATGGCTGAGGTACAAATACCAGAAGCGAGATGTTT 260282 Query 94620 CTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGA 94679 ||| | | || | || ||||| | |||| || | || |||| |||||| || Sbjct 260281 CTACGGTTTCCAAATTGCTATTGAAAATATCCATGCTGAAATGTATAGTACACTCATTGA 260222 Query 94680 CAAGTATATTAAGGATGGTGCTGAGAAGAAG-CAGCTCTT--TGAA-GCCATCCAAACAG 94735 | | || |||||| | ||| ||| || | || | || ||||| | || | Sbjct 260221 AACTTTGATAAAGGAT----CAAAGAGAAAGACATCGTTTGTTCAATGCCATTGATACTG 260166 Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 94795 |||| | | | |||||||| || |||||||||||| ||| | ||| || || Sbjct 260165 TTCCATCTGTACAAAAGAAGGCACGTTGGGCTATGAAATGGATCAATAATGAGAA---TT 260109 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||| || || | || || ||||| |||||||| ||||| |||||||||||||| | Sbjct 260108 TATTTGCCGAACGTTTATTGGCCTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTT 260049 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 |||| | |||| |||| | ||||| || ||||||||||| ||| | |||||||| | Sbjct 260048 TCTGTTCCATTTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATG 259989 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | | ||||| ||||| || ||| | ||| || ||||| Sbjct 259988 AATTAATCTCCCGTGATGAAGGATTACACACTGATTTTGC 259949 >seq9 Length=695587 Score = 105 bits (116), Expect = 8e-18 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | ||||| | ||||| || | ||||||||||||| | ||||| |||| Sbjct 332665 CTATTTCATGCCATTGATACAGTACCATCAGTTCAAAAGAAAGCTAACTGGGCATTGAAA 332724 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| || || | || || |||||||| || | || |||||||| ||||| ||| Sbjct 332725 TGGATTAATTCTGAGAA---TTTGTTTGCTGAAAGATTGTTGGCATTTGCATGTGTGGAG 332781 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 || || ||||||||||| || || | |||| ||| | ||||| || ||||| ||| Sbjct 332782 GGAATTTTCTTCTCTGGAAGTTTTTGTTCAATTTTCTGGTTAAAGAAACGTGGTCTGATG 332841 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || ||| | | ||||| || || | || |||||||| || || Sbjct 332842 CCTGGTTTATCATTCTCTAATGAATTGATATCTCGTGATGAAGG 332885 >seq66 Length=243952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 7505 TTGGGTAACATAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 7564 |||||||| | | || | ||||||||||| || || ||||| |||||| |||||||| Sbjct 115890 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGGCATGCCAAGGATTATGTTAAAGCTATG 115949 Query 7565 TGGCTCATGCTTCAACAAGAGGAAGCC-GACGAATA-TGTAGTAGCAACGGGTGAGA 7619 ||| | |||||||||||||| ||||| | ||| || ||| || || || ||||||| Sbjct 115950 TGGTTGATGCTTCAACAAGA-AAAGCCAGCCGATTACTGT-GTTGCCACTGGTGAGA 116004 >seq8 Length=938756 Score = 82.4 bits (90), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 7505 TTGGGTAACATAAACGCGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 7564 |||||||| | | || | ||||||||||| || || ||||||||||||||||| ||| Sbjct 717434 TTGGGTAATTTGGATGCTGAAAGAGATTGGGGACATGCTAAGGACTATGTTGAAGCCATG 717375 Query 7565 TGGCTCATGCTTCAACAAGAGGAAGCC-GACGAATATGTAGTAGCAACGGGTGA 7617 ||| | ||||| |||||||| ||||| | ||| ||| || || || ||||| Sbjct 717374 TGGTTGATGCTCCAACAAGA-AAAGCCAGCCGATTATTGTGTTGCCACTGGTGA 717322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255084044160