Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 109 6e-19 seq231 98.7 1e-15 seq62 98.7 1e-15 >seq9 Length=695587 Score = 109 bits (120), Expect = 6e-19 Identities = 353/537 (66%), Gaps = 16/537 (3%) Strand=Plus/Plus Query 59584 TGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCG 59643 |||||| |||| || || | || | |||||||||| | || |||||| |||| || Sbjct 332357 TGTGGGAAATGTACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTC 332416 Query 59644 CCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGG 59703 | || | | || ||||| || ||||||| | || || ||||||||||||| | Sbjct 332417 ACACTGATATAACTGAATGGGAAAAACTCAATTCTAATGAACAACATTTCATCAAGACAG 332476 Query 59704 TCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTT 59763 | ||||||||||| || || |||||||||||||| | |||||| | | | ||| || Sbjct 332477 TGCTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCT--ATGTCAACAATT 332534 Query 59764 CCAAGG---ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACG 59820 || || | || || | | || || | | ||||| | | ||| || | Sbjct 332535 -CATGGCACAAGTTCAAGTACCAGAAGCAAGATGTTTCTATGGATTTCAAATTGCCATTG 332593 Query 59821 AGTCTATCCACTCCGAGACGTACTCG--CTCATGATCGATAAGTTGGTCAAGGATCCGGA 59878 | ||| || | || | ||| | | ||| | || || | || | || || | | Sbjct 332594 AAAATATTCATGCTGAAATGTA-TAGTACTC-TCATTGAAACTCTGATTAAAGA--CCAA 332649 Query 59879 AGAGAAGG--CTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCA 59936 |||||| | | |||| || | |||||| || || || ||||| || | ||||| Sbjct 332650 AGAGAAAGAAATCGTCTATTTCATGCCATTGATACAGTACCATCAGTTCAAAAGAAAGCT 332709 Query 59937 GAATGGGCCATGCAGTGGATGAGTCCTGGAGCA-TCATTTGCACAACGTCTCATAGCTTT 59995 | ||||| || | ||||| | | || ||| | | ||||| || | | | || || Sbjct 332710 AACTGGGCATTGAAATGGATTAATTCT-GAGAATTTGTTTGCTGAAAGATTGTTGGCATT 332768 Query 59996 TGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAA 60055 |||||| ||||| ||||| ||||||||||| || ||| | ||||||||| | || || Sbjct 332769 TGCATGTGTGGAGGGAATTTTCTTCTCTGGAAGTTTTTGTTCAATTTTCTGGTTAAAGAA 332828 Query 60056 GCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||||| || ||||| || | ||||| || || |||| || || || || || Sbjct 332829 ACGTGGTCTGATGCCTGGTTTATCATTCTCTAATGAATTGATATCTCGTGATGAAGG 332885 >seq231 Length=8293 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 59584 TGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCG 59643 |||||| |||| || || | || | |||||||||| | || |||||| |||| || Sbjct 928 TGTGGGAAATGTACAAAAAGACAATGGCTTCATTCTGGACAGTGGAGGAGGTTGATCTTC 987 Query 59644 CCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGG 59703 | || | | || ||||| || ||||| | | || || ||||||||||||| | Sbjct 988 ACACTGATATAACTGAATGGGAAAAACTCAACTCTAATGAACAACATTTCATCAAGACAG 1047 Query 59704 TCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATA 59750 | ||||||||||| ||||| |||||||||||||| | |||||| || Sbjct 1048 TGCTGGCCTTCTTTGCGGCCAGTGATGGAATTGTCAATGAAAATCTA 1094 >seq62 Length=286411 Score = 98.7 bits (108), Expect = 1e-15 Identities = 177/254 (70%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 59862 TTGGTCAAGGATCCGGAAGAGAAGGC--TGGTCTGTTCCGTGCCATAGAGACGTCCCCCG 59919 ||| | ||||||| ||||||| | | || ||||| |||||| || || || Sbjct 260217 TTGATAAAGGATCA--AAGAGAAAGACATCGTTTGTTCAATGCCATTGATACTGTTCCAT 260160 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATC-ATTTGCA 59978 | || || | || ||| ||||| ||| | ||||| | | || || || |||||| Sbjct 260159 CTGTACAAAAGAAGGCACGTTGGGCTATGAAATGGATCAATAATG-AGAATTTATTTGCC 260101 Query 59979 CAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 ||||| | | || ||||| || || ||||| || ||||||||||| || |||||| | Sbjct 260100 GAACGTTTATTGGCCTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGTTCTTTCTGTTCC 260041 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 ||||| ||| | || || ||||| |||||||| || || |||||||| || | || Sbjct 260040 ATTTTTTGGTTGAAGAAACGTGGTCTCATGCCTGGTTTGGCATTCTCCAATGAATTAATC 259981 Query 60099 TCCCGGGACGAGGG 60112 ||||| || || || Sbjct 259980 TCCCGTGATGAAGG 259967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519424456960